Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
HMGCS2P54868 AC239868.2-201ENST00000564237 4527 ntBASIC6.29□□□□□ -1.4
HMGCS2P54868 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.29□□□□□ -1.4
HMGCS2P54868 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
HMGCS2P54868 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
HMGCS2P54868 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.28□□□□□ -1.4
HMGCS2P54868 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
HMGCS2P54868 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
HMGCS2P54868 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.28□□□□□ -1.4
HMGCS2P54868 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HMGCS2P54868 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HMGCS2P54868 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC6.28□□□□□ -1.4
HMGCS2P54868 AC211486.3-201ENST00000412694 621 ntBASIC6.28□□□□□ -1.4
HMGCS2P54868 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.28□□□□□ -1.4
HMGCS2P54868 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC6.28□□□□□ -1.4
HMGCS2P54868 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.28□□□□□ -1.4
HMGCS2P54868 AC108161.1-201ENST00000461060 402 ntBASIC6.28□□□□□ -1.4
HMGCS2P54868 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
HMGCS2P54868 AC108043.1-201ENST00000512696 574 ntBASIC6.28□□□□□ -1.4
HMGCS2P54868 AC092593.2-201ENST00000513866 913 ntBASIC6.28□□□□□ -1.4
HMGCS2P54868 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.28□□□□□ -1.4
HMGCS2P54868 RNA5SP228-201ENST00000516232 133 ntBASIC6.28□□□□□ -1.4
HMGCS2P54868 RN7SKP147-201ENST00000517154 244 ntBASIC6.28□□□□□ -1.4
HMGCS2P54868 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.28□□□□□ -1.4
HMGCS2P54868 AC092490.3-201ENST00000545370 572 ntBASIC6.28□□□□□ -1.4
HMGCS2P54868 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC6.28□□□□□ -1.4
HMGCS2P54868 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC6.28□□□□□ -1.4
HMGCS2P54868 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC6.28□□□□□ -1.4
HMGCS2P54868 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.28□□□□□ -1.4
HMGCS2P54868 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.28□□□□□ -1.4
HMGCS2P54868 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.28□□□□□ -1.4
HMGCS2P54868 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.28□□□□□ -1.4
HMGCS2P54868 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.28□□□□□ -1.4
HMGCS2P54868 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.28□□□□□ -1.4
HMGCS2P54868 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
HMGCS2P54868 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.28□□□□□ -1.4
HMGCS2P54868 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
HMGCS2P54868 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
HMGCS2P54868 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC6.27□□□□□ -1.4
HMGCS2P54868 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HMGCS2P54868 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.27□□□□□ -1.41
HMGCS2P54868 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC6.27□□□□□ -1.41
HMGCS2P54868 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HMGCS2P54868 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.27□□□□□ -1.41
HMGCS2P54868 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HMGCS2P54868 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.27□□□□□ -1.41
HMGCS2P54868 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.27□□□□□ -1.41
HMGCS2P54868 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
HMGCS2P54868 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC6.27□□□□□ -1.41
HMGCS2P54868 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC6.27□□□□□ -1.41
HMGCS2P54868 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC6.27□□□□□ -1.41
HMGCS2P54868 AC002075.1-201ENST00000457396 676 ntBASIC6.27□□□□□ -1.41
HMGCS2P54868 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC6.27□□□□□ -1.41
HMGCS2P54868 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.27□□□□□ -1.41
HMGCS2P54868 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.27□□□□□ -1.41
HMGCS2P54868 AC016590.3-201ENST00000611171 753 ntBASIC6.27□□□□□ -1.41
HMGCS2P54868 PCA3_2.1-201ENST00000612507 409 ntBASIC6.27□□□□□ -1.41
HMGCS2P54868 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.27□□□□□ -1.41
HMGCS2P54868 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC6.27□□□□□ -1.41
HMGCS2P54868 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
HMGCS2P54868 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.27□□□□□ -1.41
HMGCS2P54868 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
HMGCS2P54868 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.27□□□□□ -1.41
HMGCS2P54868 AL078621.3-201ENST00000623707 2042 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 HSPD1P7-201ENST00000447985 1686 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
HMGCS2P54868 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
HMGCS2P54868 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
HMGCS2P54868 SNORA56-201ENST00000383966 129 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGCS2P54868 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC6.26□□□□□ -1.41
HMGCS2P54868 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC6.26□□□□□ -1.41
HMGCS2P54868 RPL12P17-201ENST00000432393 498 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 AC006466.1-201ENST00000438721 289 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 AL390879.1-201ENST00000439143 386 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC6.26□□□□□ -1.41
HMGCS2P54868 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC6.26□□□□□ -1.41
HMGCS2P54868 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC6.26□□□□□ -1.41
HMGCS2P54868 FTH1P8-201ENST00000498161 514 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 AC109464.1-201ENST00000511091 819 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 IGHVIII-76-1-201ENST00000523776 286 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 HIGD1AP5-201ENST00000529959 259 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 AC024940.3-201ENST00000538551 316 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGCS2P54868 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC6.26□□□□□ -1.41
HMGCS2P54868 MIR4480-201ENST00000582492 71 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 AP000769.2-201ENST00000602344 396 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 FAM25E-202ENST00000608562 189 ntBASIC6.26□□□□□ -1.41
HMGCS2P54868 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.26□□□□□ -1.41
HMGCS2P54868 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 484.8 ms