Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXD4P09016 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
HOXD4P09016 LINC01963-201ENST00000562038 3148 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXD4P09016 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXD4P09016 RN7SKP162-201ENST00000363605 345 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXD4P09016 AC079809.1-201ENST00000415468 276 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 AC017078.1-201ENST00000416146 368 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXD4P09016 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
HOXD4P09016 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXD4P09016 MTCO3P17-201ENST00000443775 513 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXD4P09016 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXD4P09016 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXD4P09016 AL162739.1-201ENST00000450606 307 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXD4P09016 SBDSP1-204ENST00000453858 737 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXD4P09016 ACA64.4-201ENST00000459070 127 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXD4P09016 OR7E157P-201ENST00000494376 911 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 AC074255.1-201ENST00000511259 501 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXD4P09016 RNU6-615P-201ENST00000516065 106 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HOXD4P09016 OR4A43P-201ENST00000532938 908 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXD4P09016 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXD4P09016 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXD4P09016 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXD4P09016 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXD4P09016 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXD4P09016 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXD4P09016 AL021707.7-201ENST00000607991 416 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXD4P09016 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXD4P09016 AL035661.1-201ENST00000620459 1144 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.23□□□□□ -1.57
HOXD4P09016 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXD4P09016 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXD4P09016 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXD4P09016 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.23□□□□□ -1.57
HOXD4P09016 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXD4P09016 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXD4P09016 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXD4P09016 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXD4P09016 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXD4P09016 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXD4P09016 RNA5SP394-201ENST00000364216 119 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 RNU6-167P-201ENST00000384292 106 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 HMGB1P20-201ENST00000402555 677 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 RN7SKP29-201ENST00000410957 272 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC015977.1-201ENST00000418887 292 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXD4P09016 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC092106.1-201ENST00000444291 373 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 AL450996.1-201ENST00000445574 1202 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 AC108693.1-201ENST00000496068 432 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 RNU6-1334P-201ENST00000516032 105 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 RNU6-513P-201ENST00000516104 104 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 RNA5SP34-201ENST00000516887 130 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXD4P09016 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXD4P09016 AL049872.1-201ENST00000556323 322 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXD4P09016 BNIP3P32-201ENST00000600015 554 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 AC004890.3-201ENST00000605566 1095 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 AC079395.2-201ENST00000610982 737 ntBASIC5.22□□□□□ -1.57
HOXD4P09016 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXD4P09016 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
HOXD4P09016 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXD4P09016 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
HOXD4P09016 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.21□□□□□ -1.57
HOXD4P09016 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms