Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.07□□□□□ -1.6
SPTA1P02549 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC5.07□□□□□ -1.6
SPTA1P02549 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SPTA1P02549 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 AL138820.1-201ENST00000617901 5305 ntBASIC5.07□□□□□ -1.6
SPTA1P02549 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC5.07□□□□□ -1.6
SPTA1P02549 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
SPTA1P02549 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.07□□□□□ -1.6
SPTA1P02549 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.07□□□□□ -1.6
SPTA1P02549 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.07□□□□□ -1.6
SPTA1P02549 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.07□□□□□ -1.6
SPTA1P02549 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.07□□□□□ -1.6
SPTA1P02549 RPL38P3-201ENST00000484463 213 ntBASIC5.07□□□□□ -1.6
SPTA1P02549 AC139365.2-201ENST00000517972 253 ntBASIC5.07□□□□□ -1.6
SPTA1P02549 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.07□□□□□ -1.6
SPTA1P02549 AC060766.1-201ENST00000590824 627 ntBASIC5.07□□□□□ -1.6
SPTA1P02549 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.07□□□□□ -1.6
SPTA1P02549 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC5.07□□□□□ -1.6
SPTA1P02549 AL359757.1-201ENST00000623176 255 ntBASIC5.07□□□□□ -1.6
SPTA1P02549 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
SPTA1P02549 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.07□□□□□ -1.6
SPTA1P02549 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 AOX3P-204ENST00000491025 2107 ntBASIC5.07□□□□□ -1.6
SPTA1P02549 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SPTA1P02549 AC011493.1-201ENST00000596753 1632 ntBASIC5.07□□□□□ -1.6
SPTA1P02549 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.07□□□□□ -1.6
SPTA1P02549 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SPTA1P02549 AC068870.1-201ENST00000563737 2455 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.06□□□□□ -1.6
SPTA1P02549 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SPTA1P02549 RNU1-85P-201ENST00000364127 164 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SPTA1P02549 AC068138.1-201ENST00000412635 217 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 AL451062.2-201ENST00000427515 271 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 CR383656.1-201ENST00000484916 377 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 AC008033.2-201ENST00000542626 177 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.06□□□□□ -1.6
SPTA1P02549 AC091193.1-201ENST00000604640 448 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.06□□□□□ -1.6
SPTA1P02549 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
SPTA1P02549 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.06□□□□□ -1.6
SPTA1P02549 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
SPTA1P02549 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 BX322650.1-201ENST00000332359 2143 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SPTA1P02549 AC004690.1-201ENST00000418216 328 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.06□□□□□ -1.6
SPTA1P02549 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.06□□□□□ -1.6
SPTA1P02549 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.06□□□□□ -1.6
SPTA1P02549 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.06□□□□□ -1.6
SPTA1P02549 AC105384.2-201ENST00000508433 640 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5.06□□□□□ -1.6
SPTA1P02549 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.06□□□□□ -1.6
SPTA1P02549 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.06□□□□□ -1.6
SPTA1P02549 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.06□□□□□ -1.6
SPTA1P02549 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.06□□□□□ -1.6
SPTA1P02549 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.06□□□□□ -1.6
SPTA1P02549 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.06□□□□□ -1.6
SPTA1P02549 ABCA11P-202ENST00000504019 2110 ntBASIC5.06□□□□□ -1.6
SPTA1P02549 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SPTA1P02549 XIST-206ENST00000434839 2865 ntTSL 5 BASIC5.06□□□□□ -1.6
SPTA1P02549 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SPTA1P02549 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SPTA1P02549 MEF2C-217ENST00000510942 3446 ntTSL 5 BASIC5.05□□□□□ -1.6
SPTA1P02549 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SPTA1P02549 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SPTA1P02549 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SPTA1P02549 OR9G4-201ENST00000302957 984 ntBASIC5.05□□□□□ -1.6
SPTA1P02549 RNU4-4P-201ENST00000364588 130 ntBASIC5.05□□□□□ -1.6
SPTA1P02549 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.05□□□□□ -1.6
SPTA1P02549 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SPTA1P02549 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.05□□□□□ -1.6
SPTA1P02549 AC234779.1-201ENST00000425910 285 ntBASIC5.05□□□□□ -1.6
SPTA1P02549 RPL23AP83-201ENST00000434984 473 ntBASIC5.05□□□□□ -1.6
SPTA1P02549 RN7SKP147-201ENST00000517154 244 ntBASIC5.05□□□□□ -1.6
SPTA1P02549 MIR4429-201ENST00000580105 73 ntBASIC5.05□□□□□ -1.6
SPTA1P02549 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.05□□□□□ -1.6
SPTA1P02549 uc_338.26-201ENST00000612659 160 ntBASIC5.05□□□□□ -1.6
SPTA1P02549 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms