Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 KLHL3-207ENST00000506491 6566 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 PARP4P1-201ENST00000435945 2337 ntBASIC2.32□□□□□ -2.04
USH2AO75445 PCDH15-224ENST00000612394 5765 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
USH2AO75445 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 U3.3-201ENST00000362986 216 ntBASIC2.32□□□□□ -2.04
USH2AO75445 RNA5SP428-201ENST00000365129 132 ntBASIC2.32□□□□□ -2.04
USH2AO75445 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC2.32□□□□□ -2.04
USH2AO75445 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC2.32□□□□□ -2.04
USH2AO75445 RPS27AP12-201ENST00000429552 465 ntBASIC2.32□□□□□ -2.04
USH2AO75445 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC2.32□□□□□ -2.04
USH2AO75445 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC2.32□□□□□ -2.04
USH2AO75445 RPL23AP2-201ENST00000471227 466 ntBASIC2.32□□□□□ -2.04
USH2AO75445 RPL23AP40-201ENST00000487630 390 ntBASIC2.32□□□□□ -2.04
USH2AO75445 AC104971.1-201ENST00000495117 578 ntBASIC2.32□□□□□ -2.04
USH2AO75445 MTCO1P35-201ENST00000515270 228 ntBASIC2.32□□□□□ -2.04
USH2AO75445 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC2.32□□□□□ -2.04
USH2AO75445 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC2.32□□□□□ -2.04
USH2AO75445 AP003789.1-201ENST00000617737 605 ntBASIC2.32□□□□□ -2.04
USH2AO75445 AC116631.1-202ENST00000640984 683 ntBASIC2.32□□□□□ -2.04
USH2AO75445 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
USH2AO75445 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
USH2AO75445 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 RAD50-201ENST00000378823 8306 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 EFHC1-201ENST00000371068 6987 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC2.32□□□□□ -2.04
USH2AO75445 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC2.32□□□□□ -2.04
USH2AO75445 OR4K17-202ENST00000641386 4886 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
USH2AO75445 SHPRH-206ENST00000438092 6994 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 TANK-206ENST00000406287 875 ntTSL 5 BASIC2.32□□□□□ -2.04
USH2AO75445 AC096921.1-201ENST00000411661 375 ntBASIC2.32□□□□□ -2.04
USH2AO75445 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USH2AO75445 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC2.32□□□□□ -2.04
USH2AO75445 RPS12P31-201ENST00000491419 398 ntBASIC2.32□□□□□ -2.04
USH2AO75445 RN7SL244P-201ENST00000493405 297 ntBASIC2.32□□□□□ -2.04
USH2AO75445 AC074255.1-201ENST00000511259 501 ntBASIC2.32□□□□□ -2.04
USH2AO75445 RPL21P12-201ENST00000559810 515 ntBASIC2.32□□□□□ -2.04
USH2AO75445 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC2.32□□□□□ -2.04
USH2AO75445 DNAH2-203ENST00000572933 14955 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
USH2AO75445 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 AC104964.2-201ENST00000562242 4641 ntBASIC2.31□□□□□ -2.04
USH2AO75445 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 DSTYK-202ENST00000367162 7874 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 AMER1-201ENST00000330258 8443 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 AC015977.1-201ENST00000418887 292 ntBASIC2.31□□□□□ -2.04
USH2AO75445 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC2.31□□□□□ -2.04
USH2AO75445 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.31□□□□□ -2.04
USH2AO75445 RN7SKP253-201ENST00000516424 309 ntBASIC2.31□□□□□ -2.04
USH2AO75445 MTCO1P49-201ENST00000523429 802 ntBASIC2.31□□□□□ -2.04
USH2AO75445 MIR3944-201ENST00000581277 108 ntBASIC2.31□□□□□ -2.04
USH2AO75445 MIR132-201ENST00000591554 101 ntBASIC2.31□□□□□ -2.04
USH2AO75445 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.31□□□□□ -2.04
USH2AO75445 RMST-209ENST00000639542 3269 ntTSL 5 BASIC2.31□□□□□ -2.04
USH2AO75445 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC2.31□□□□□ -2.04
USH2AO75445 ACAN-206ENST00000559004 7628 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
USH2AO75445 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 DNM3-208ENST00000627582 7625 ntAPPRIS ALT1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 RNA5SP509-201ENST00000364577 119 ntBASIC2.31□□□□□ -2.04
USH2AO75445 MIR129-1-201ENST00000384972 72 ntBASIC2.31□□□□□ -2.04
USH2AO75445 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC2.31□□□□□ -2.04
USH2AO75445 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC2.31□□□□□ -2.04
USH2AO75445 AC114755.5-201ENST00000447760 831 ntBASIC2.31□□□□□ -2.04
USH2AO75445 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC2.31□□□□□ -2.04
USH2AO75445 AC106806.2-201ENST00000509365 500 ntBASIC2.31□□□□□ -2.04
USH2AO75445 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC2.31□□□□□ -2.04
USH2AO75445 RGS5-219ENST00000528019 512 ntTSL 4 BASIC2.31□□□□□ -2.04
USH2AO75445 MIR3138-201ENST00000585238 82 ntBASIC2.31□□□□□ -2.04
USH2AO75445 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC2.31□□□□□ -2.04
USH2AO75445 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
USH2AO75445 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
USH2AO75445 ZAN-206ENST00000618565 8651 ntAPPRIS P4 TSL 5 BASIC2.31□□□□□ -2.04
USH2AO75445 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC2.31□□□□□ -2.04
USH2AO75445 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
USH2AO75445 AC008938.1-201ENST00000566929 6510 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 EP400NL-208ENST00000475841 7090 ntTSL 2 BASIC2.31□□□□□ -2.04
USH2AO75445 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC2.31□□□□□ -2.04
USH2AO75445 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
USH2AO75445 SNORD113.2-201ENST00000364166 89 ntBASIC2.31□□□□□ -2.04
USH2AO75445 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC2.31□□□□□ -2.04
USH2AO75445 MIR449B-201ENST00000384995 97 ntBASIC2.31□□□□□ -2.04
USH2AO75445 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC2.31□□□□□ -2.04
USH2AO75445 ARL4AP4-201ENST00000434170 518 ntBASIC2.31□□□□□ -2.04
USH2AO75445 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC2.31□□□□□ -2.04
USH2AO75445 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC2.31□□□□□ -2.04
USH2AO75445 GMPSP1-201ENST00000514075 579 ntBASIC2.31□□□□□ -2.04
USH2AO75445 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
USH2AO75445 BNIP3P10-201ENST00000605360 577 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms