Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SDCBPO00560 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SDCBPO00560 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
SDCBPO00560 OR52B3P-201ENST00000314715 928 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AC107977.1-201ENST00000355745 939 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC4.61□□□□□ -1.67
SDCBPO00560 CXADRP1-201ENST00000398098 1095 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC4.61□□□□□ -1.67
SDCBPO00560 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC4.61□□□□□ -1.67
SDCBPO00560 RPL7AP49-201ENST00000429522 581 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AL591438.1-201ENST00000433508 581 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 RPL19P16-201ENST00000433839 588 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.61□□□□□ -1.67
SDCBPO00560 AC006335.2-201ENST00000437993 330 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 DNAJA1P5-201ENST00000440278 943 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AC011476.1-201ENST00000466725 307 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 RN7SL583P-201ENST00000475692 287 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.61□□□□□ -1.67
SDCBPO00560 AC109481.1-201ENST00000509173 282 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.61□□□□□ -1.67
SDCBPO00560 CDC42P3-201ENST00000518493 633 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC4.61□□□□□ -1.67
SDCBPO00560 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC4.61□□□□□ -1.67
SDCBPO00560 MINCR-206ENST00000524335 499 ntTSL 2 BASIC4.61□□□□□ -1.67
SDCBPO00560 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC4.61□□□□□ -1.67
SDCBPO00560 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.61□□□□□ -1.67
SDCBPO00560 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC4.61□□□□□ -1.67
SDCBPO00560 IGBP1P1-201ENST00000554337 1009 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC4.61□□□□□ -1.67
SDCBPO00560 HMGN2P47-201ENST00000559378 272 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.61□□□□□ -1.67
SDCBPO00560 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.61□□□□□ -1.67
SDCBPO00560 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC4.61□□□□□ -1.67
SDCBPO00560 AL096712.1-201ENST00000614561 159 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 CXADRP3-202ENST00000617265 1100 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AC091932.2-201ENST00000623014 291 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AC129915.3-201ENST00000634128 948 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AP000550.3-201ENST00000637734 379 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 AC073869.8-201ENST00000641806 335 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 AC007842.1-201ENST00000597336 2039 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
SDCBPO00560 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 AC106872.5-201ENST00000508856 1416 ntBASIC4.61□□□□□ -1.67
SDCBPO00560 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC4.61□□□□□ -1.67
SDCBPO00560 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.61□□□□□ -1.67
SDCBPO00560 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
SDCBPO00560 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
SDCBPO00560 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SDCBPO00560 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
SDCBPO00560 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC4.6□□□□□ -1.67
SDCBPO00560 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC4.6□□□□□ -1.67
SDCBPO00560 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 MRE11P1-201ENST00000464884 2127 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
SDCBPO00560 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC4.6□□□□□ -1.67
SDCBPO00560 HMGB1P20-201ENST00000402555 677 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 HMGN1P20-201ENST00000411849 300 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 EEF1A1P29-201ENST00000416082 1096 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC4.6□□□□□ -1.67
SDCBPO00560 RPL24P2-201ENST00000421023 475 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC4.6□□□□□ -1.67
SDCBPO00560 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 CDY8P-201ENST00000428380 1279 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.6□□□□□ -1.67
SDCBPO00560 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.6□□□□□ -1.67
SDCBPO00560 AC092106.1-201ENST00000444291 373 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 CDY20P-201ENST00000447528 1279 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.6□□□□□ -1.67
SDCBPO00560 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC4.6□□□□□ -1.67
SDCBPO00560 RPS23P6-201ENST00000466136 431 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 OR2A1-AS1-202ENST00000467944 422 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SDCBPO00560 RNU6-615P-201ENST00000516065 106 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 SCARNA20.4-201ENST00000516969 131 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC4.6□□□□□ -1.67
SDCBPO00560 MRPS16P1-201ENST00000523462 412 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 BCAS2P1-201ENST00000528022 632 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 OR8G3P-201ENST00000533406 921 ntBASIC4.6□□□□□ -1.67
SDCBPO00560 GNG2-208ENST00000554875 430 ntTSL 5 BASIC4.6□□□□□ -1.67
SDCBPO00560 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms