Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SNORA70.20-201ENST00000516848 126 ntBASIC5.83□□□□□ -1.48
PCDH9Q9HC56 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 OR4A43P-201ENST00000532938 908 ntBASIC5.83□□□□□ -1.48
PCDH9Q9HC56 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 AC107993.1-201ENST00000591343 684 ntBASIC5.83□□□□□ -1.48
PCDH9Q9HC56 AL139124.1-201ENST00000609123 421 ntBASIC5.83□□□□□ -1.48
PCDH9Q9HC56 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 AL356094.1-201ENST00000624663 1212 ntBASIC5.83□□□□□ -1.48
PCDH9Q9HC56 AC022919.1-201ENST00000624979 626 ntBASIC5.83□□□□□ -1.48
PCDH9Q9HC56 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.83□□□□□ -1.48
PCDH9Q9HC56 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 U3.28-201ENST00000391249 210 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AL133482.1-201ENST00000415988 498 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AKR1B10P1-201ENST00000425765 942 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 MAPRE1P3-201ENST00000435438 796 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 NANOGP9-201ENST00000439890 892 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AL359265.1-201ENST00000440296 795 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 PCNPP2-201ENST00000441651 455 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 REG1CP-206ENST00000447469 496 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 NXT1P1-201ENST00000458481 316 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 RPS17P15-201ENST00000475609 349 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 CR383656.1-201ENST00000484916 377 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 NENFP3-201ENST00000503735 313 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 RN7SKP253-201ENST00000516424 309 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 SEPT10P1-201ENST00000517342 1162 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 AC092574.1-201ENST00000609771 420 ntBASIC5.82□□□□□ -1.48
PCDH9Q9HC56 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.82□□□□□ -1.48
PCDH9Q9HC56 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 OR56A4-201ENST00000330728 1209 ntBASIC5.81□□□□□ -1.48
PCDH9Q9HC56 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 RPS3AP2-201ENST00000407190 754 ntBASIC5.81□□□□□ -1.48
PCDH9Q9HC56 RPS3P2-201ENST00000421346 701 ntBASIC5.81□□□□□ -1.48
PCDH9Q9HC56 AL356806.1-201ENST00000422524 916 ntBASIC5.81□□□□□ -1.48
PCDH9Q9HC56 AC009784.1-201ENST00000426484 460 ntBASIC5.81□□□□□ -1.48
PCDH9Q9HC56 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
PCDH9Q9HC56 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 120.9 ms