Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
VPS39Q96JC1 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.67□□□□□ -1.5
VPS39Q96JC1 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VPS39Q96JC1 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC007938.2-201ENST00000604666 2634 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 PEX12P1-201ENST00000400284 1048 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 RNA5SP431-201ENST00000410312 120 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 AK4P4-201ENST00000419465 646 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AL354766.1-201ENST00000423396 542 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC007679.3-201ENST00000434035 414 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 HMGB3P10-201ENST00000434734 572 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 LINC02210-201ENST00000444561 288 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 NXT1P1-201ENST00000458481 316 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 RPL32P33-201ENST00000487023 394 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC011853.1-201ENST00000518911 454 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 HMGN2P36-201ENST00000529541 409 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 CYCSP38-201ENST00000559840 322 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 AC073593.1-201ENST00000624500 411 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 OR4F13P-202ENST00000560066 2054 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ABCC13-202ENST00000463099 3842 ntBASIC5.66□□□□□ -1.5
VPS39Q96JC1 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
VPS39Q96JC1 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
VPS39Q96JC1 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS39Q96JC1 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
VPS39Q96JC1 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS39Q96JC1 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
VPS39Q96JC1 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 AL353625.1-202ENST00000366273 571 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 NPM1P18-201ENST00000434232 732 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 RN7SL741P-201ENST00000482473 289 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 RPS27AP18-201ENST00000515536 459 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 NPM1P52-201ENST00000518264 846 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 PMS2P3-207ENST00000529061 717 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 MIR4271-201ENST00000582451 67 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
VPS39Q96JC1 AC129778.1-202ENST00000623812 261 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.65□□□□□ -1.5
VPS39Q96JC1 AL591379.1-207ENST00000635982 261 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.65□□□□□ -1.5
VPS39Q96JC1 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.65□□□□□ -1.51
VPS39Q96JC1 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.65□□□□□ -1.51
VPS39Q96JC1 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS39Q96JC1 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
VPS39Q96JC1 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS39Q96JC1 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.51
VPS39Q96JC1 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
VPS39Q96JC1 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms