Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC079315.1-201ENST00000602952 623 ntBASIC5.72□□□□□ -1.49
VMP1Q96GC9 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.72□□□□□ -1.49
VMP1Q96GC9 AC004801.6-201ENST00000616571 978 ntBASIC5.72□□□□□ -1.49
VMP1Q96GC9 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.72□□□□□ -1.49
VMP1Q96GC9 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.72□□□□□ -1.49
VMP1Q96GC9 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.72□□□□□ -1.49
VMP1Q96GC9 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC5.72□□□□□ -1.49
VMP1Q96GC9 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.72□□□□□ -1.49
VMP1Q96GC9 AC003992.1-201ENST00000635364 557 ntBASIC5.72□□□□□ -1.49
VMP1Q96GC9 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.72□□□□□ -1.49
VMP1Q96GC9 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.72□□□□□ -1.49
VMP1Q96GC9 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VMP1Q96GC9 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VMP1Q96GC9 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
VMP1Q96GC9 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
VMP1Q96GC9 CCNT2P1-201ENST00000423082 1315 ntBASIC5.72□□□□□ -1.49
VMP1Q96GC9 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.72□□□□□ -1.49
VMP1Q96GC9 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
VMP1Q96GC9 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
VMP1Q96GC9 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
VMP1Q96GC9 BRAFP1-201ENST00000445336 2703 ntBASIC5.71□□□□□ -1.49
VMP1Q96GC9 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
VMP1Q96GC9 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.71□□□□□ -1.49
VMP1Q96GC9 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
VMP1Q96GC9 HDAC1P2-201ENST00000453661 1398 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VMP1Q96GC9 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
VMP1Q96GC9 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VMP1Q96GC9 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 RNU1-74P-201ENST00000384108 171 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AL158827.1-201ENST00000416300 391 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC006065.1-201ENST00000422539 802 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 MTND6P12-201ENST00000428247 522 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC023141.3-201ENST00000436698 278 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 AL353662.1-201ENST00000439099 327 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 AL138899.2-201ENST00000439139 499 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 PCNPP2-201ENST00000441651 455 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 VN1R48P-201ENST00000448149 1036 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 PPIAP27-201ENST00000453800 265 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 EIF2S2P4-201ENST00000461070 984 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC020779.1-201ENST00000478757 796 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 RN7SL809P-201ENST00000482040 297 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 BTG4P1-201ENST00000510421 183 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC019322.1-201ENST00000571869 389 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC008507.3-201ENST00000585753 472 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AC027334.1-201ENST00000603257 310 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 AL137067.2-201ENST00000621202 131 ntBASIC5.71□□□□□ -1.5
VMP1Q96GC9 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
VMP1Q96GC9 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
VMP1Q96GC9 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
VMP1Q96GC9 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
VMP1Q96GC9 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VMP1Q96GC9 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
VMP1Q96GC9 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
VMP1Q96GC9 OR7E156P-201ENST00000400303 464 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 AL034374.1-201ENST00000406329 351 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 RN7SKP247-201ENST00000411094 308 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 AL590806.1-201ENST00000415818 853 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 RPL12P12-201ENST00000424633 501 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 AC002069.1-201ENST00000429649 1159 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 AC015983.1-201ENST00000441577 373 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 TRIM60P16-201ENST00000444048 694 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 RPL10P17-201ENST00000453852 316 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 AC023194.2-201ENST00000465398 406 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 AC021205.1-201ENST00000468797 348 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 AC096741.1-201ENST00000472250 846 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 LSM3P4-201ENST00000502948 309 ntBASIC5.7□□□□□ -1.5
VMP1Q96GC9 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.7□□□□□ -1.5
VMP1Q96GC9 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms