Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC6.09□□□□□ -1.43
HDAC4P56524 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
HDAC4P56524 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
HDAC4P56524 PROS2P-201ENST00000474651 1951 ntBASIC6.09□□□□□ -1.43
HDAC4P56524 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
HDAC4P56524 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.08□□□□□ -1.44
HDAC4P56524 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 OR9K1P-202ENST00000641111 3217 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 SUGT1P2-201ENST00000379452 992 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 RN7SKP240-201ENST00000410583 375 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 CDY17P-201ENST00000414121 1282 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.08□□□□□ -1.44
HDAC4P56524 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.08□□□□□ -1.44
HDAC4P56524 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 CDY8P-201ENST00000428380 1279 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC6.08□□□□□ -1.44
HDAC4P56524 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC6.08□□□□□ -1.44
HDAC4P56524 PCBP2P1-201ENST00000437262 977 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 AC015983.1-201ENST00000441577 373 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 HMGN1P2-201ENST00000445197 310 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 CDY20P-201ENST00000447528 1279 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 RPL31P53-201ENST00000457065 348 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC6.08□□□□□ -1.44
HDAC4P56524 AC094085.1-201ENST00000468914 584 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 RN7SL57P-201ENST00000493687 290 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 AC126615.2-201ENST00000553003 515 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.08□□□□□ -1.44
HDAC4P56524 AL731537.2-201ENST00000561565 951 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 AC006363.1-201ENST00000603806 463 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 AC092953.2-201ENST00000608000 699 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 AC092574.1-201ENST00000609771 420 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 RNA5SP439-201ENST00000617595 124 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.08□□□□□ -1.44
HDAC4P56524 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.08□□□□□ -1.44
HDAC4P56524 AL163152.1-201ENST00000642001 374 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 AC019072.1-201ENST00000604535 1551 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
HDAC4P56524 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 HSPA8P14-201ENST00000552265 1805 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 AC007342.5-201ENST00000571340 2142 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
HDAC4P56524 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.08□□□□□ -1.44
HDAC4P56524 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 OR51C1P-202ENST00000641159 1444 ntBASIC6.08□□□□□ -1.44
HDAC4P56524 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC6.08□□□□□ -1.44
HDAC4P56524 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
HDAC4P56524 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HDAC4P56524 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.07□□□□□ -1.44
HDAC4P56524 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HDAC4P56524 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
HDAC4P56524 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
HDAC4P56524 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC6.07□□□□□ -1.44
HDAC4P56524 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.07□□□□□ -1.44
HDAC4P56524 BX323845.3-201ENST00000428215 527 ntBASIC6.07□□□□□ -1.44
HDAC4P56524 GAPDHP48-201ENST00000436626 961 ntBASIC6.07□□□□□ -1.44
HDAC4P56524 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC6.07□□□□□ -1.44
HDAC4P56524 KRT8P51-201ENST00000438938 274 ntBASIC6.07□□□□□ -1.44
HDAC4P56524 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.07□□□□□ -1.44
HDAC4P56524 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.07□□□□□ -1.44
HDAC4P56524 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC6.07□□□□□ -1.44
HDAC4P56524 RN7SL72P-201ENST00000460697 269 ntBASIC6.07□□□□□ -1.44
HDAC4P56524 NDUFA5P5-201ENST00000468361 342 ntBASIC6.07□□□□□ -1.44
HDAC4P56524 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HDAC4P56524 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.07□□□□□ -1.44
HDAC4P56524 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HDAC4P56524 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.07□□□□□ -1.44
HDAC4P56524 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.07□□□□□ -1.44
HDAC4P56524 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC6.07□□□□□ -1.44
HDAC4P56524 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HDAC4P56524 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC6.07□□□□□ -1.44
HDAC4P56524 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.07□□□□□ -1.44
HDAC4P56524 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
HDAC4P56524 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC6.07□□□□□ -1.44
HDAC4P56524 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC6.07□□□□□ -1.44
HDAC4P56524 AC005014.3-201ENST00000605985 190 ntBASIC6.07□□□□□ -1.44
HDAC4P56524 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.07□□□□□ -1.44
HDAC4P56524 FO681491.1-202ENST00000623392 737 ntBASIC6.07□□□□□ -1.44
HDAC4P56524 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms