Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL645638.1-201ENST00000440519 361 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.74□□□□□ -1.33
SMARCA1P28370 RPL12P24-201ENST00000474907 486 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.74□□□□□ -1.33
SMARCA1P28370 AC093801.2-201ENST00000503966 1050 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 AC105420.1-201ENST00000504389 582 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC6.74□□□□□ -1.33
SMARCA1P28370 AC108157.1-201ENST00000510511 539 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 VTA1P2-201ENST00000520205 911 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC6.74□□□□□ -1.33
SMARCA1P28370 AC079600.1-201ENST00000550326 297 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.74□□□□□ -1.33
SMARCA1P28370 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC6.74□□□□□ -1.33
SMARCA1P28370 AC104072.1-201ENST00000568817 668 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC6.74□□□□□ -1.33
SMARCA1P28370 AP001496.3-201ENST00000580230 913 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC6.74□□□□□ -1.33
SMARCA1P28370 FAM27E4-201ENST00000605259 342 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 AC135178.6-201ENST00000605314 398 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 AC015982.1-201ENST00000608113 465 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.74□□□□□ -1.33
SMARCA1P28370 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
SMARCA1P28370 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.74□□□□□ -1.33
SMARCA1P28370 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.74□□□□□ -1.33
SMARCA1P28370 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.74□□□□□ -1.33
SMARCA1P28370 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 AC106872.5-201ENST00000508856 1416 ntBASIC6.74□□□□□ -1.33
SMARCA1P28370 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.74□□□□□ -1.33
SMARCA1P28370 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
SMARCA1P28370 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.74□□□□□ -1.33
SMARCA1P28370 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMARCA1P28370 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC6.73□□□□□ -1.33
SMARCA1P28370 AL161756.3-201ENST00000641216 2071 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
SMARCA1P28370 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.73□□□□□ -1.33
SMARCA1P28370 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
SMARCA1P28370 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
SMARCA1P28370 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC6.73□□□□□ -1.33
SMARCA1P28370 RN7SKP78-201ENST00000364711 318 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC6.73□□□□□ -1.33
SMARCA1P28370 AL022331.1-201ENST00000429025 477 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 USP24P1-201ENST00000433802 779 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 RPS3AP38-201ENST00000435889 763 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 MTND6P5-201ENST00000448266 512 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AC093166.4-201ENST00000457867 318 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AC078857.1-201ENST00000469870 667 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AC007998.1-201ENST00000474156 672 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AC079080.1-201ENST00000479841 822 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AC006539.1-201ENST00000481419 501 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 RN7SL570P-201ENST00000484405 292 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 PSMA2P2-201ENST00000504319 686 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 PCNAP1-201ENST00000505363 709 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AC112198.4-201ENST00000515450 351 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 SNORA70.20-201ENST00000516848 126 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AC138701.1-201ENST00000524329 714 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC6.73□□□□□ -1.33
SMARCA1P28370 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC6.73□□□□□ -1.33
SMARCA1P28370 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.73□□□□□ -1.33
SMARCA1P28370 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC6.73□□□□□ -1.33
SMARCA1P28370 AC009237.12-201ENST00000604755 742 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 KATNBL1P5-201ENST00000605015 517 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AC097504.2-201ENST00000608088 454 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC6.73□□□□□ -1.33
SMARCA1P28370 AL031658.2-201ENST00000616850 651 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC6.73□□□□□ -1.33
SMARCA1P28370 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.73□□□□□ -1.33
SMARCA1P28370 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 AC112255.1-201ENST00000624070 2493 ntBASIC6.73□□□□□ -1.33
SMARCA1P28370 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.73□□□□□ -1.33
SMARCA1P28370 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMARCA1P28370 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
SMARCA1P28370 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.73□□□□□ -1.33
SMARCA1P28370 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
SMARCA1P28370 AL034546.1-201ENST00000623740 3693 ntBASIC6.72□□□□□ -1.33
SMARCA1P28370 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.72□□□□□ -1.33
SMARCA1P28370 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.72□□□□□ -1.33
SMARCA1P28370 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
SMARCA1P28370 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
SMARCA1P28370 AC022164.1-201ENST00000568767 2673 ntBASIC6.72□□□□□ -1.33
SMARCA1P28370 RN7SKP292-201ENST00000365522 317 ntBASIC6.72□□□□□ -1.33
SMARCA1P28370 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
SMARCA1P28370 CDY17P-201ENST00000414121 1282 ntBASIC6.72□□□□□ -1.33
SMARCA1P28370 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC6.72□□□□□ -1.33
SMARCA1P28370 AC093155.2-201ENST00000420734 937 ntBASIC6.72□□□□□ -1.33
SMARCA1P28370 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms