Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 AP000526.1-201ENST00000603308 1388 ntBASIC7.12□□□□□ -1.27
LIG3P49916 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 AC023490.2-201ENST00000359859 470 ntBASIC7.12□□□□□ -1.27
LIG3P49916 RN7SKP107-201ENST00000364157 290 ntBASIC7.12□□□□□ -1.27
LIG3P49916 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 OR5H15-201ENST00000383696 930 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AL035419.1-201ENST00000397037 564 ntBASIC7.12□□□□□ -1.27
LIG3P49916 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 MRPL32P1-201ENST00000406301 247 ntBASIC7.12□□□□□ -1.27
LIG3P49916 HMGB3P18-201ENST00000406327 590 ntBASIC7.12□□□□□ -1.27
LIG3P49916 OR2W4P-201ENST00000406496 926 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AL451061.1-201ENST00000407887 862 ntBASIC7.12□□□□□ -1.27
LIG3P49916 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 AC027644.1-201ENST00000419595 298 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 OR5AW1P-201ENST00000426334 1006 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 MTND3P1-201ENST00000441336 220 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 SLAMF6P1-201ENST00000451067 602 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 RBMY2EP-202ENST00000456360 940 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AL133480.2-201ENST00000456723 487 ntBASIC7.12□□□□□ -1.27
LIG3P49916 RPS27AP2-201ENST00000457576 465 ntBASIC7.12□□□□□ -1.27
LIG3P49916 SNORA81.1-201ENST00000458922 177 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 RN7SL797P-201ENST00000486314 297 ntBASIC7.12□□□□□ -1.27
LIG3P49916 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 AC010424.1-201ENST00000506336 297 ntBASIC7.12□□□□□ -1.27
LIG3P49916 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC7.12□□□□□ -1.27
LIG3P49916 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 IGHVIII-38-1-201ENST00000521454 282 ntBASIC7.12□□□□□ -1.27
LIG3P49916 IGHVIII-25-1-201ENST00000522143 241 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.12□□□□□ -1.27
LIG3P49916 ASB8-207ENST00000536953 923 ntTSL 2 BASIC7.12□□□□□ -1.27
LIG3P49916 AKIRIN1P1-201ENST00000547384 544 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 BLZF2P-201ENST00000553776 1130 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 ISCA1P3-201ENST00000577104 373 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC7.12□□□□□ -1.27
LIG3P49916 RSL24D1P11-201ENST00000591045 491 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 VN1R88P-201ENST00000596787 292 ntBASIC7.12□□□□□ -1.27
LIG3P49916 VN1R82P-201ENST00000601481 356 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC006539.2-201ENST00000601729 572 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC078795.2-201ENST00000602835 1252 ntBASIC7.12□□□□□ -1.27
LIG3P49916 NTAN1P1-201ENST00000603150 646 ntBASIC7.12□□□□□ -1.27
LIG3P49916 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 AL352984.2-202ENST00000613699 155 ntBASIC7.12□□□□□ -1.27
LIG3P49916 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC7.12□□□□□ -1.27
LIG3P49916 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC7.12□□□□□ -1.27
LIG3P49916 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 AC104837.1-201ENST00000444644 1587 ntBASIC7.12□□□□□ -1.27
LIG3P49916 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC7.12□□□□□ -1.27
LIG3P49916 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 AL358913.2-201ENST00000553881 1548 ntBASIC7.11□□□□□ -1.27
LIG3P49916 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
LIG3P49916 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC7.11□□□□□ -1.27
LIG3P49916 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC7.11□□□□□ -1.27
LIG3P49916 AC092104.1-201ENST00000497346 1441 ntBASIC7.11□□□□□ -1.27
LIG3P49916 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
LIG3P49916 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
LIG3P49916 HSP90AA2P-201ENST00000530115 2196 ntBASIC7.11□□□□□ -1.27
LIG3P49916 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC7.11□□□□□ -1.27
LIG3P49916 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
LIG3P49916 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
LIG3P49916 RNA5SP53-201ENST00000391299 120 ntBASIC7.11□□□□□ -1.27
LIG3P49916 AL590762.1-201ENST00000391782 432 ntBASIC7.11□□□□□ -1.27
LIG3P49916 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms