Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 AP001541.1-201ENST00000623322 1904 ntBASIC6.04□□□□□ -1.44
MSX2P35548 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 OR2M4-201ENST00000306687 936 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
MSX2P35548 AC023886.2-201ENST00000321285 411 ntBASIC6.04□□□□□ -1.44
MSX2P35548 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 RNFT1P3-201ENST00000340898 1052 ntBASIC6.04□□□□□ -1.44
MSX2P35548 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 MIR365B-201ENST00000362317 111 ntBASIC6.04□□□□□ -1.44
MSX2P35548 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.04□□□□□ -1.44
MSX2P35548 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 MIR431-201ENST00000385266 114 ntBASIC6.04□□□□□ -1.44
MSX2P35548 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
MSX2P35548 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 RAP1BP1-201ENST00000412709 553 ntBASIC6.04□□□□□ -1.44
MSX2P35548 SEPT7P8-201ENST00000413308 775 ntBASIC6.04□□□□□ -1.44
MSX2P35548 CDY17P-201ENST00000414121 1282 ntBASIC6.04□□□□□ -1.44
MSX2P35548 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC6.04□□□□□ -1.44
MSX2P35548 SMARCE1P1-201ENST00000417747 1186 ntBASIC6.04□□□□□ -1.44
MSX2P35548 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 RPL23AP85-201ENST00000421838 433 ntBASIC6.04□□□□□ -1.44
MSX2P35548 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 CDY8P-201ENST00000428380 1279 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC003989.1-201ENST00000434569 565 ntBASIC6.04□□□□□ -1.44
MSX2P35548 DNAJA1P5-201ENST00000440278 943 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 HSFY3P-201ENST00000444242 1191 ntBASIC6.04□□□□□ -1.44
MSX2P35548 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC6.04□□□□□ -1.44
MSX2P35548 EXTL2P1-201ENST00000446218 416 ntBASIC6.04□□□□□ -1.44
MSX2P35548 CDY20P-201ENST00000447528 1279 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AL589880.1-201ENST00000448271 287 ntBASIC6.04□□□□□ -1.44
MSX2P35548 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 AC008280.2-201ENST00000455473 307 ntBASIC6.04□□□□□ -1.44
MSX2P35548 RPL7P45-201ENST00000455851 743 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 AC106760.2-201ENST00000504159 619 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC008945.1-201ENST00000505144 499 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 MTND1P5-201ENST00000517906 940 ntBASIC6.04□□□□□ -1.44
MSX2P35548 IGKV2D-38-201ENST00000518423 240 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.04□□□□□ -1.44
MSX2P35548 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC6.04□□□□□ -1.44
MSX2P35548 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC6.04□□□□□ -1.44
MSX2P35548 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC6.04□□□□□ -1.44
MSX2P35548 AC069234.3-201ENST00000544939 569 ntTSL 4 BASIC6.04□□□□□ -1.44
MSX2P35548 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 AL512310.9-201ENST00000553311 948 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 AC106734.1-201ENST00000568646 663 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC024614.1-201ENST00000577546 307 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 RNU6-84P-201ENST00000607737 102 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC245297.2-201ENST00000610119 565 ntBASIC6.04□□□□□ -1.44
MSX2P35548 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.04□□□□□ -1.44
MSX2P35548 TUSC7.1-201ENST00000610969 165 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC009120.7-201ENST00000623452 780 ntBASIC6.04□□□□□ -1.44
MSX2P35548 AC084035.1-201ENST00000634543 607 ntBASIC6.04□□□□□ -1.44
MSX2P35548 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
MSX2P35548 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.04□□□□□ -1.44
MSX2P35548 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
MSX2P35548 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC6.04□□□□□ -1.44
MSX2P35548 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.04□□□□□ -1.44
MSX2P35548 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
MSX2P35548 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 EEF1A1P30-201ENST00000429708 1315 ntBASIC6.03□□□□□ -1.44
MSX2P35548 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC6.03□□□□□ -1.44
MSX2P35548 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
MSX2P35548 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 RNU6-252P-201ENST00000363232 107 ntBASIC6.03□□□□□ -1.44
MSX2P35548 SNORD113-6-201ENST00000363345 75 ntBASIC6.03□□□□□ -1.44
MSX2P35548 RNU12-2P-201ENST00000364789 156 ntBASIC6.03□□□□□ -1.44
MSX2P35548 RN7SKP189-201ENST00000365042 330 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AL590635.1-201ENST00000406314 586 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 NME1P1-201ENST00000420914 382 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms