Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 XIST-210ENST00000602863 775 ntTSL 3 BASIC8.27□□□□□ -1.09
COL9A1P20849 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC8.27□□□□□ -1.09
COL9A1P20849 AC022893.3-201ENST00000607665 437 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC8.27□□□□□ -1.09
COL9A1P20849 MIR6885-201ENST00000612241 66 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AL133173.2-201ENST00000614270 90 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC244517.12-201ENST00000623581 663 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 AC091953.4-201ENST00000625179 341 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC8.27□□□□□ -1.09
COL9A1P20849 SRP54-214ENST00000630962 162 ntTSL 5 BASIC8.27□□□□□ -1.09
COL9A1P20849 NLRP3-204ENST00000366497 4318 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 SLC8A1-206ENST00000406391 2814 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 F5-202ENST00000367797 7024 ntAPPRIS P2 TSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 DCAF8-203ENST00000368074 3824 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.09
COL9A1P20849 WDFY2-201ENST00000298125 9321 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 DHRS9-201ENST00000357546 1917 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 AC109780.1-201ENST00000451768 1344 ntBASIC8.27□□□□□ -1.09
COL9A1P20849 MXI1-203ENST00000361248 2188 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
COL9A1P20849 ZNF215-202ENST00000414517 3257 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.09
COL9A1P20849 ARID2-201ENST00000334344 8642 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 RRN3-201ENST00000198767 3762 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 CDY1B-202ENST00000382407 2227 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
COL9A1P20849 AC083902.2-201ENST00000511828 10086 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 ZNF343-201ENST00000278772 3632 ntAPPRIS P3 TSL 2 BASIC8.26□□□□□ -1.09
COL9A1P20849 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 SERPINA1-207ENST00000440909 3144 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 OR4G1P-203ENST00000641984 1631 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 UNC5C-201ENST00000453304 9875 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 CDH23-203ENST00000398788 4329 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 CYCS-201ENST00000305786 4098 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 FRRS1-201ENST00000287474 2678 ntAPPRIS P1 TSL 2 BASIC8.26□□□□□ -1.09
COL9A1P20849 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 RNU6-492P-201ENST00000363035 104 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC8.26□□□□□ -1.09
COL9A1P20849 RNU6-452P-201ENST00000384406 107 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 STAMBP-203ENST00000394073 6386 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC8.26□□□□□ -1.09
COL9A1P20849 AL161787.1-201ENST00000401543 174 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC8.26□□□□□ -1.09
COL9A1P20849 MIR1305-201ENST00000408300 86 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AL354890.1-201ENST00000413730 346 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 RPL21P110-201ENST00000433345 446 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AC105052.2-201ENST00000434317 794 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC8.26□□□□□ -1.09
COL9A1P20849 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC8.26□□□□□ -1.09
COL9A1P20849 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC8.26□□□□□ -1.09
COL9A1P20849 VN1R6P-201ENST00000458417 907 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AC079193.1-201ENST00000460497 588 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC8.26□□□□□ -1.09
COL9A1P20849 RPL12P40-201ENST00000467028 488 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AC025271.1-201ENST00000485045 429 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 RN7SL170P-201ENST00000487098 295 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 RN7SL864P-201ENST00000493457 285 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 RPL10P7-201ENST00000495649 625 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AC008799.1-201ENST00000495909 457 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 SUMO2P17-201ENST00000504438 285 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 RPL7L1P7-201ENST00000509986 724 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC8.26□□□□□ -1.09
COL9A1P20849 RNU6-388P-201ENST00000517012 105 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 RNU6-389P-201ENST00000517048 105 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC8.26□□□□□ -1.09
COL9A1P20849 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 LINC01608-202ENST00000524283 561 ntTSL 4 BASIC8.26□□□□□ -1.09
COL9A1P20849 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC8.26□□□□□ -1.09
COL9A1P20849 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC8.26□□□□□ -1.09
COL9A1P20849 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC8.26□□□□□ -1.09
COL9A1P20849 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC8.26□□□□□ -1.09
COL9A1P20849 AC010327.2-201ENST00000587647 488 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AC005262.1-201ENST00000588562 362 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AC129492.5-201ENST00000603489 315 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AL390058.1-201ENST00000603834 629 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AC010332.1-201ENST00000620439 97 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 AC079597.1-201ENST00000624306 508 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 PCBP1-AS1-322ENST00000628147 553 ntTSL 5 BASIC8.26□□□□□ -1.09
COL9A1P20849 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC8.26□□□□□ -1.09
COL9A1P20849 C3P1-202ENST00000497718 4954 ntBASIC8.26□□□□□ -1.09
COL9A1P20849 HELQ-204ENST00000510985 3315 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 C2orf91-201ENST00000378711 3721 ntAPPRIS P2 TSL 2 BASIC8.26□□□□□ -1.09
COL9A1P20849 RBM22-201ENST00000199814 2342 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 WIPF3-203ENST00000409290 4002 ntAPPRIS P2 TSL 5 BASIC8.26□□□□□ -1.09
COL9A1P20849 SERPINA1-208ENST00000448921 3532 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 LIMCH1-219ENST00000514096 3543 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 AP4S1-204ENST00000542754 4243 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 KANK1-205ENST00000382297 5051 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
COL9A1P20849 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC8.26□□□□□ -1.09
COL9A1P20849 CXorf57-201ENST00000372544 3607 ntTSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 FAM9C-201ENST00000333995 3361 ntAPPRIS P2 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 SPATA31E3P-201ENST00000613133 4214 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 OR5M2P-202ENST00000641241 4242 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 MAP4-207ENST00000426837 8920 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
COL9A1P20849 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 PAX6-259ENST00000639916 2622 ntAPPRIS ALT1 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 AC093616.1-201ENST00000427434 2095 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 CCL16-205ENST00000611905 1506 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms