Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LUARIS-201ENST00000436105 2916 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
LIMD1Q9UGP4 MYB-235ENST00000533624 1818 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
LIMD1Q9UGP4 MYB-238ENST00000534044 1812 ntTSL 1 (best) BASIC8.06□□□□□ -1.12
LIMD1Q9UGP4 ZNF334-201ENST00000347606 3890 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 NSD2-224ENST00000514045 3964 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 MTRF1-202ENST00000379477 1948 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 RECQL5-203ENST00000420326 3710 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LINC01358-211ENST00000635571 1687 ntTSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 TAF1-204ENST00000423759 7722 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 EEF1A1P16-201ENST00000325349 1414 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 OR8B9P-202ENST00000642028 5216 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 MAPK10-285ENST00000641207 2746 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 SLC31A1-201ENST00000374212 4744 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 WDHD1-202ENST00000420358 3722 ntTSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 ESRP1-202ENST00000423620 3746 ntAPPRIS ALT1 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AL109811.1-201ENST00000452378 2682 ntTSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 ENSA-207ENST00000362052 703 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 RNU6-582P-201ENST00000362989 107 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 SNORD56.2-201ENST00000363242 71 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 RNU6-1103P-201ENST00000384150 107 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 DNAJA1P4-201ENST00000406473 1166 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 GAS8-AS1-201ENST00000408886 435 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 C1D-203ENST00000409302 772 ntAPPRIS P1 TSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC007390.1-201ENST00000415722 356 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AP000997.1-201ENST00000424313 479 ntTSL 3 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 SNX18P3-201ENST00000424993 835 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 RPL7P4-203ENST00000430239 730 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 UBE2V1P5-201ENST00000440070 405 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 TRBV5-4-201ENST00000454561 544 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC234782.3-201ENST00000461229 433 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 RPL7P48-201ENST00000461513 746 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 RN7SL456P-201ENST00000469290 295 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC087385.2-201ENST00000477729 498 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 OR7E99P-201ENST00000505750 922 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 Y_RNA.693-201ENST00000516641 110 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 OR5D2P-201ENST00000524390 911 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 PHBP2-201ENST00000532859 806 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 CDRT8-201ENST00000579752 467 ntTSL 3 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 NRBF2P1-201ENST00000587407 859 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC007136.1-201ENST00000589141 199 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC073389.2-201ENST00000606726 571 ntTSL 4 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 Y_RNA.812-201ENST00000610788 101 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 Y_RNA.784-201ENST00000613803 101 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AL442067.2-201ENST00000614033 363 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 Y_RNA.787-201ENST00000616522 101 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 Y_RNA.780-201ENST00000617336 101 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 Y_RNA.801-201ENST00000619005 101 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 Metazoa_SRP.108-201ENST00000621610 300 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC116563.2-201ENST00000624751 535 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 AC006065.6-201ENST00000625201 545 ntBASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 SORBS1-208ENST00000371241 2055 ntAPPRIS ALT2 TSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LINC02059-202ENST00000506471 2094 ntTSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 RHOJ-201ENST00000316754 3302 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 CU633906.2-201ENST00000624576 2257 ntTSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 GULP1-203ENST00000409609 1932 ntAPPRIS P3 TSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 OR14J1-203ENST00000641895 6443 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 ZNF438-202ENST00000361310 3144 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LINC01427-202ENST00000635258 4566 ntTSL 5 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 ZNF670-ZNF695-202ENST00000474541 2751 ntAPPRIS ALT2 TSL 2 BASIC8.05□□□□□ -1.12
LIMD1Q9UGP4 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 NLRP3-202ENST00000348069 3828 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 TCF7L2-209ENST00000369395 1541 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 KLHL2-204ENST00000506761 2169 ntTSL 5 BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 HEPH-201ENST00000336279 4228 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 VPS8-204ENST00000424463 2359 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 PIWIL3-204ENST00000533313 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 AMPD3-204ENST00000444303 3994 ntTSL 2 BASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 Y_RNA.142-201ENST00000363491 102 ntBASIC8.04□□□□□ -1.12
LIMD1Q9UGP4 SNORA62.2-201ENST00000364672 152 ntBASIC8.04□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 213.1 ms