Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PPP1R12B-204ENST00000391959 15431 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 RPS3AP23-201ENST00000401762 784 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AL451063.1-201ENST00000450164 1133 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AL162739.1-201ENST00000450606 307 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 RNA5SP43-201ENST00000516559 110 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC005341.1-201ENST00000571086 708 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC098935.2-201ENST00000604222 466 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 CCT8P1-201ENST00000413611 1657 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 NCOA4P3-201ENST00000513203 1877 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 MFSD8-220ENST00000641243 1422 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 RPS7P6-201ENST00000485777 579 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 NIP7P2-201ENST00000485801 544 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC068831.4-201ENST00000556118 109 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 CR381572.2-201ENST00000624852 397 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 FRMPD4-202ENST00000616992 7916 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 PAN2-202ENST00000425394 5372 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 CDY5P-201ENST00000411487 1580 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 CDY9P-201ENST00000451397 1580 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 HSPD1P7-201ENST00000447985 1686 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AL122126.1-201ENST00000546905 1318 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 MEGF10-203ENST00000503335 7571 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 MTCO1P15-201ENST00000529569 1526 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 KARSP3-201ENST00000571212 1504 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 FAM32BP-201ENST00000344033 333 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 RPEP3-201ENST00000425462 676 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AL731534.1-201ENST00000434711 269 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 RPL23AP83-201ENST00000434984 473 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AC022916.3-201ENST00000592961 742 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 AP003789.1-201ENST00000617737 605 ntBASIC5.18□□□□□ -1.58
VPS13AQ96RL7 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 GPM6A-201ENST00000280187 2854 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
VPS13AQ96RL7 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 RNA5SP447-201ENST00000363749 119 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AL136455.1-201ENST00000441083 1240 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 SCARNA16.4-201ENST00000516956 187 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AC073869.8-201ENST00000641806 335 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 OR4K15-201ENST00000305051 1216 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 RPL7AP52-201ENST00000458096 790 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AC020593.1-201ENST00000507399 299 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.17□□□□□ -1.58
VPS13AQ96RL7 TOMM22P4-201ENST00000511318 336 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 OR4A17P-201ENST00000526032 904 ntBASIC5.17□□□□□ -1.58
VPS13AQ96RL7 AP000889.1-201ENST00000530968 660 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms