Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 BX005266.3-201ENST00000443013 1075 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC005515.1-201ENST00000456368 289 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC005229.2-201ENST00000456995 399 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 LINC00518-202ENST00000479822 906 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 PGBD4P4-201ENST00000509673 613 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC106774.2-201ENST00000510266 406 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 OR7E83P-201ENST00000511021 970 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC138866.1-201ENST00000514522 497 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 RNU6-506P-201ENST00000516553 94 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC008676.1-202ENST00000520658 545 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 OR6C73P-201ENST00000546432 358 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 OR4G1P-201ENST00000588632 938 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC011891.2-201ENST00000604949 397 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC104117.5-201ENST00000606195 547 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 CUX2P1-201ENST00000606426 298 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AF250324.2-201ENST00000608299 610 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC109347.2-201ENST00000610220 349 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC090970.3-201ENST00000612566 866 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC023310.4-201ENST00000613130 650 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC006335.3-201ENST00000613408 292 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 METAP1-212ENST00000625963 147 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AL133243.4-201ENST00000623116 3109 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 SP110-203ENST00000358662 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 CASC19-248ENST00000641674 1356 ntBASIC5.77□□□□□ -1.49
CCDC140Q96MF4 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 RHOJ-201ENST00000316754 3302 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 KIAA1324L-203ENST00000416314 3179 ntAPPRIS P3 TSL 2 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 ATM-215ENST00000530958 5718 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 ANTXR2-204ENST00000404191 1469 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
CCDC140Q96MF4 TMPPE-202ENST00000416695 3451 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 NDFIP2-206ENST00000620924 2324 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 CYP1D1P-201ENST00000416662 1433 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC092821.3-202ENST00000641304 2767 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 CU638689.4-201ENST00000623047 5990 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 NPIPB4-203ENST00000415645 3606 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 MTND5P26-201ENST00000426018 1752 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RN7SKP211-201ENST00000363328 315 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 SNORA40.3-201ENST00000390964 122 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RPL7-203ENST00000396466 762 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 SNRPEP2-201ENST00000397592 279 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RPS3AP23-201ENST00000401762 784 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AL691515.2-201ENST00000414765 466 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RBMY2KP-201ENST00000418221 992 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 SETP9-201ENST00000423837 832 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 GAPDHP57-201ENST00000424400 585 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 CBWD5-209ENST00000430059 1242 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 ZYG11AP1-201ENST00000430329 837 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 PRPS1P2-201ENST00000430496 937 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 MTCO3P21-201ENST00000430791 643 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 NEK4P1-201ENST00000433383 879 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RPL5P4-201ENST00000434805 886 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC002504.1-201ENST00000438281 691 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RBMX2P4-201ENST00000441256 376 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 LINC00578-202ENST00000442937 612 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC009970.1-201ENST00000444873 432 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AL451074.4-201ENST00000447545 470 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 ATP5G1P6-201ENST00000451206 412 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AL592464.2-201ENST00000457440 607 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RN7SL213P-201ENST00000463482 317 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 KLF3P2-201ENST00000465138 268 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 MTND6P6-201ENST00000478031 263 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 AC084878.1-201ENST00000480555 648 ntBASIC5.76□□□□□ -1.49
CCDC140Q96MF4 RPL7P6-201ENST00000480903 738 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms