Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 AC087565.3-203ENST00000641018 837 ntBASIC5.69□□□□□ -1.5
MSH3P20585 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH3P20585 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH3P20585 AC004076.2-201ENST00000620532 3323 ntBASIC5.69□□□□□ -1.5
MSH3P20585 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
MSH3P20585 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH3P20585 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH3P20585 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH3P20585 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.69□□□□□ -1.5
MSH3P20585 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
MSH3P20585 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 SAMM50P1-201ENST00000455403 1399 ntBASIC5.68□□□□□ -1.5
MSH3P20585 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MSH3P20585 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
MSH3P20585 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH3P20585 AP005435.3-201ENST00000531260 3198 ntBASIC5.68□□□□□ -1.5
MSH3P20585 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
MSH3P20585 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MSH3P20585 U3.23-201ENST00000391132 200 ntBASIC5.68□□□□□ -1.5
MSH3P20585 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
MSH3P20585 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 AL050305.1-201ENST00000399993 1230 ntBASIC5.68□□□□□ -1.5
MSH3P20585 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.68□□□□□ -1.5
MSH3P20585 ZNF92P1Y-201ENST00000415010 1191 ntBASIC5.68□□□□□ -1.5
MSH3P20585 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 NIFKP3-201ENST00000417799 865 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 RNGTTP1-201ENST00000420965 728 ntBASIC5.68□□□□□ -1.5
MSH3P20585 REREP1Y-201ENST00000422655 198 ntBASIC5.68□□□□□ -1.5
MSH3P20585 RPL5P2-201ENST00000429598 854 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC079807.1-201ENST00000429993 481 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH3P20585 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 REREP2Y-201ENST00000439103 200 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 AC017099.1-201ENST00000448261 1028 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 RPL12P39-201ENST00000455456 496 ntBASIC5.68□□□□□ -1.5
MSH3P20585 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.68□□□□□ -1.5
MSH3P20585 AC009120.1-201ENST00000493458 473 ntBASIC5.68□□□□□ -1.5
MSH3P20585 OR7E157P-201ENST00000494376 911 ntBASIC5.68□□□□□ -1.5
MSH3P20585 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 PSMA2P2-201ENST00000504319 686 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH3P20585 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 SNORD46.2-201ENST00000516021 102 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH3P20585 AC084824.2-201ENST00000548906 345 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC096996.1-201ENST00000563813 325 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH3P20585 AC008521.2-201ENST00000591021 259 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC009303.3-201ENST00000591103 736 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH3P20585 RN7SL544P-201ENST00000617232 284 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AP005431.1-201ENST00000618479 319 ntBASIC5.68□□□□□ -1.5
MSH3P20585 RN7SL763P-201ENST00000620922 284 ntBASIC5.68□□□□□ -1.5
MSH3P20585 AL390318.1-201ENST00000624564 687 ntBASIC5.68□□□□□ -1.5
MSH3P20585 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH3P20585 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 AC015689.2-201ENST00000528172 1738 ntBASIC5.68□□□□□ -1.5
MSH3P20585 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSH3P20585 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
MSH3P20585 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH3P20585 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.67□□□□□ -1.5
MSH3P20585 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.67□□□□□ -1.5
MSH3P20585 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
MSH3P20585 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
MSH3P20585 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
MSH3P20585 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
MSH3P20585 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
MSH3P20585 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.67□□□□□ -1.5
MSH3P20585 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH3P20585 AL589826.1-201ENST00000340697 249 ntBASIC5.67□□□□□ -1.5
MSH3P20585 AL159987.1-201ENST00000347911 293 ntBASIC5.67□□□□□ -1.5
MSH3P20585 RNA5SP284-201ENST00000384547 118 ntBASIC5.67□□□□□ -1.5
MSH3P20585 RNA5SP91-201ENST00000390902 119 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 759.9 ms