Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.49□□□□□ -1.37
COL4A1P02462 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A1P02462 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC6.49□□□□□ -1.37
COL4A1P02462 MRRF-207ENST00000373729 870 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A1P02462 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
COL4A1P02462 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AL139128.1-201ENST00000413921 941 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A1P02462 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A1P02462 AC093414.1-201ENST00000434712 514 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A1P02462 RPS29P33-201ENST00000456717 146 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AC021006.3-201ENST00000530771 192 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A1P02462 AC018552.1-201ENST00000562099 811 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A1P02462 AC008745.1-201ENST00000604064 271 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 AP003789.1-201ENST00000617737 605 ntBASIC6.49□□□□□ -1.37
COL4A1P02462 LPP-208ENST00000448637 5835 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 AC138907.8-201ENST00000623981 2256 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
COL4A1P02462 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC6.48□□□□□ -1.37
COL4A1P02462 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
COL4A1P02462 KYNUP3-201ENST00000574386 1341 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
COL4A1P02462 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 AC126755.2-208ENST00000327792 462 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 AC138969.1-213ENST00000331436 462 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 RPL37P18-201ENST00000411602 243 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 AL049745.1-201ENST00000433953 286 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
COL4A1P02462 AC011753.3-201ENST00000443436 406 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC6.48□□□□□ -1.37
COL4A1P02462 AC007686.1-201ENST00000488511 463 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.48□□□□□ -1.37
COL4A1P02462 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC6.48□□□□□ -1.37
COL4A1P02462 GTF2F2P1-201ENST00000511083 675 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.48□□□□□ -1.37
COL4A1P02462 AC209154.1-201ENST00000582156 337 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 AC015712.7-201ENST00000615211 635 ntBASIC6.48□□□□□ -1.37
COL4A1P02462 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.48□□□□□ -1.37
COL4A1P02462 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL4A1P02462 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A1P02462 Z82209.2-201ENST00000623410 2012 ntBASIC6.47□□□□□ -1.37
COL4A1P02462 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC6.47□□□□□ -1.37
COL4A1P02462 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL4A1P02462 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
COL4A1P02462 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.47□□□□□ -1.37
COL4A1P02462 MIPEPP2-201ENST00000422560 1819 ntBASIC6.47□□□□□ -1.37
COL4A1P02462 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A1P02462 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A1P02462 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC6.47□□□□□ -1.37
COL4A1P02462 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC6.47□□□□□ -1.37
COL4A1P02462 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.47□□□□□ -1.37
COL4A1P02462 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.47□□□□□ -1.37
COL4A1P02462 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.47□□□□□ -1.37
COL4A1P02462 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC6.47□□□□□ -1.37
COL4A1P02462 HIGD1AP5-201ENST00000529959 259 ntBASIC6.47□□□□□ -1.37
COL4A1P02462 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC6.47□□□□□ -1.37
COL4A1P02462 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6.47□□□□□ -1.37
COL4A1P02462 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC6.47□□□□□ -1.37
COL4A1P02462 AP001357.1-201ENST00000586304 1053 ntBASIC6.47□□□□□ -1.37
COL4A1P02462 AP005131.7-201ENST00000610087 611 ntBASIC6.47□□□□□ -1.37
COL4A1P02462 AC099494.2-201ENST00000623371 978 ntBASIC6.47□□□□□ -1.37
COL4A1P02462 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
COL4A1P02462 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A1P02462 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC6.47□□□□□ -1.37
COL4A1P02462 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A1P02462 UG0898H09-202ENST00000623646 7040 ntBASIC6.47□□□□□ -1.37
COL4A1P02462 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL4A1P02462 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC6.46□□□□□ -1.37
COL4A1P02462 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.46□□□□□ -1.37
COL4A1P02462 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.37
COL4A1P02462 MIR1182-201ENST00000408363 97 ntBASIC6.46□□□□□ -1.37
COL4A1P02462 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.46□□□□□ -1.37
COL4A1P02462 DDX39BP1-205ENST00000422507 192 ntBASIC6.46□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms