Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC9.5□□□□□ -0.89
CUX2O14529 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC9.5□□□□□ -0.89
CUX2O14529 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
CUX2O14529 THAP12P4-201ENST00000528321 2266 ntBASIC9.5□□□□□ -0.89
CUX2O14529 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
CUX2O14529 AL050305.1-201ENST00000399993 1230 ntBASIC9.5□□□□□ -0.89
CUX2O14529 HSPD1P12-201ENST00000429127 1069 ntBASIC9.5□□□□□ -0.89
CUX2O14529 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC9.5□□□□□ -0.89
CUX2O14529 RN7SKP288-201ENST00000516227 268 ntBASIC9.5□□□□□ -0.89
CUX2O14529 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC9.5□□□□□ -0.89
CUX2O14529 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
CUX2O14529 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC9.5□□□□□ -0.89
CUX2O14529 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
CUX2O14529 AL353763.1-201ENST00000624467 1628 ntBASIC9.5□□□□□ -0.89
CUX2O14529 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC9.49□□□□□ -0.89
CUX2O14529 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CUX2O14529 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
CUX2O14529 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC9.49□□□□□ -0.89
CUX2O14529 NRBF2P2-201ENST00000413087 861 ntBASIC9.49□□□□□ -0.89
CUX2O14529 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC9.49□□□□□ -0.89
CUX2O14529 RPS27AP7-201ENST00000422792 455 ntBASIC9.49□□□□□ -0.89
CUX2O14529 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC9.49□□□□□ -0.89
CUX2O14529 RPL7P11-201ENST00000437586 658 ntBASIC9.49□□□□□ -0.89
CUX2O14529 AL603882.1-201ENST00000463059 681 ntBASIC9.49□□□□□ -0.89
CUX2O14529 CYP4F27P-201ENST00000514557 494 ntBASIC9.49□□□□□ -0.89
CUX2O14529 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC9.49□□□□□ -0.89
CUX2O14529 AC084824.1-201ENST00000550917 1005 ntBASIC9.49□□□□□ -0.89
CUX2O14529 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC9.49□□□□□ -0.89
CUX2O14529 AC091932.2-201ENST00000623014 291 ntBASIC9.49□□□□□ -0.89
CUX2O14529 AL596275.2-208ENST00000641192 594 ntBASIC9.49□□□□□ -0.89
CUX2O14529 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC9.49□□□□□ -0.89
CUX2O14529 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC9.49□□□□□ -0.89
CUX2O14529 MFSD8-220ENST00000641243 1422 ntBASIC9.49□□□□□ -0.89
CUX2O14529 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
CUX2O14529 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
CUX2O14529 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
CUX2O14529 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC9.49□□□□□ -0.89
CUX2O14529 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC9.49□□□□□ -0.89
CUX2O14529 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC9.48□□□□□ -0.89
CUX2O14529 AL359837.1-201ENST00000381357 287 ntBASIC9.48□□□□□ -0.89
CUX2O14529 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC9.48□□□□□ -0.89
CUX2O14529 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC9.48□□□□□ -0.89
CUX2O14529 IGHVII-44-2-201ENST00000517728 250 ntBASIC9.48□□□□□ -0.89
CUX2O14529 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC9.48□□□□□ -0.89
CUX2O14529 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC9.48□□□□□ -0.89
CUX2O14529 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
CUX2O14529 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
CUX2O14529 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
CUX2O14529 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
CUX2O14529 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
CUX2O14529 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC9.48□□□□□ -0.89
CUX2O14529 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC9.48□□□□□ -0.89
CUX2O14529 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC9.47□□□□□ -0.89
CUX2O14529 SNORA70.4-201ENST00000365509 134 ntBASIC9.47□□□□□ -0.89
CUX2O14529 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
CUX2O14529 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX2O14529 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 AL590399.4-201ENST00000436561 601 ntBASIC9.47□□□□□ -0.89
CUX2O14529 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC9.47□□□□□ -0.89
CUX2O14529 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC9.47□□□□□ -0.89
CUX2O14529 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC9.47□□□□□ -0.89
CUX2O14529 AC093227.2-201ENST00000589357 285 ntBASIC9.47□□□□□ -0.89
CUX2O14529 AC099494.2-201ENST00000623371 978 ntBASIC9.47□□□□□ -0.89
CUX2O14529 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC9.47□□□□□ -0.89
CUX2O14529 OLMALINC-203ENST00000641087 3779 ntBASIC9.47□□□□□ -0.89
CUX2O14529 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX2O14529 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 CARF-203ENST00000414439 2099 ntTSL 2 BASIC9.47□□□□□ -0.89
CUX2O14529 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX2O14529 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX2O14529 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 CARF-208ENST00000428585 2513 ntTSL 2 BASIC9.47□□□□□ -0.89
CUX2O14529 AL121768.1-201ENST00000613917 2544 ntBASIC9.47□□□□□ -0.89
CUX2O14529 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC9.47□□□□□ -0.89
CUX2O14529 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC9.47□□□□□ -0.89
CUX2O14529 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
CUX2O14529 RPS3AP23-201ENST00000401762 784 ntBASIC9.47□□□□□ -0.89
CUX2O14529 RN7SKP263-201ENST00000411194 309 ntBASIC9.47□□□□□ -0.89
CUX2O14529 RPS6P23-201ENST00000413224 722 ntBASIC9.47□□□□□ -0.89
CUX2O14529 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC9.47□□□□□ -0.89
CUX2O14529 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
CUX2O14529 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC9.47□□□□□ -0.89
CUX2O14529 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC9.47□□□□□ -0.89
CUX2O14529 AC105384.2-201ENST00000508433 640 ntBASIC9.47□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms