Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 CASC22-201ENST00000569713 386 ntTSL 5 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 MIR4301-201ENST00000577203 66 ntBASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 AC069542.2-201ENST00000624816 216 ntBASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 SNORA16A-201ENST00000384342 137 ntBASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 AL590139.1-201ENST00000416267 400 ntBASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 AC011753.3-201ENST00000443436 406 ntBASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 AC105233.1-201ENST00000498840 781 ntBASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 AC021733.2-201ENST00000518830 497 ntBASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 AC087783.2-201ENST00000605070 562 ntBASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
SHROOM4Q9ULL8 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
SHROOM4Q9ULL8 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
SHROOM4Q9ULL8 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC10.65□□□□□ -0.71
SHROOM4Q9ULL8 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.71
SHROOM4Q9ULL8 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 MRRF-207ENST00000373729 870 ntTSL 3 BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 AL035419.1-201ENST00000397037 564 ntBASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 RPS4XP9-201ENST00000405151 780 ntBASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 LDHAP2-201ENST00000437325 985 ntBASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 AC096775.1-201ENST00000437724 448 ntBASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 IGLV2-34-201ENST00000490007 283 ntBASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 UBE2Q2P10-201ENST00000514854 900 ntBASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 OR11J2P-201ENST00000555298 907 ntBASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 MAPK10-350ENST00000641777 965 ntBASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 OR4G1P-202ENST00000641173 1788 ntBASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
SHROOM4Q9ULL8 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 GNAS-202ENST00000306090 477 ntTSL 5 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 MIR192-201ENST00000384915 110 ntBASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 AL137918.1-201ENST00000624542 1922 ntBASIC10.63□□□□□ -0.71
SHROOM4Q9ULL8 RNU6ATAC7P-201ENST00000408111 127 ntBASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 AL138878.2-201ENST00000440581 1241 ntBASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 MAL2-207ENST00000522828 603 ntTSL 3 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 AC007346.2-201ENST00000564816 892 ntBASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 ZNF101P1-201ENST00000435701 1720 ntBASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC10.62□□□□□ -0.71
SHROOM4Q9ULL8 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 218.4 ms