Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 AC112220.2-201ENST00000605513 533 ntBASIC6.21□□□□□ -1.42
DKK3Q9UBP4 AL512652.1-201ENST00000619006 500 ntBASIC6.21□□□□□ -1.42
DKK3Q9UBP4 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 AC136428.4-201ENST00000634254 1155 ntBASIC6.21□□□□□ -1.42
DKK3Q9UBP4 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 AC099654.6-201ENST00000636487 512 ntBASIC6.21□□□□□ -1.42
DKK3Q9UBP4 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 AC007842.1-201ENST00000597336 2039 ntBASIC6.21□□□□□ -1.42
DKK3Q9UBP4 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.21□□□□□ -1.42
DKK3Q9UBP4 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC092070.2-203ENST00000598377 3644 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC093225.1-201ENST00000506867 1408 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AP005435.3-201ENST00000531260 3198 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 RNU1-134P-201ENST00000362935 165 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 RN7SKP275-201ENST00000364626 301 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 RPL35AP31-201ENST00000418340 337 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 GNG5P5-201ENST00000420444 220 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 CLUHP1-201ENST00000435012 1190 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AL035701.1-202ENST00000437249 371 ntTSL 3 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AL353662.1-201ENST00000439099 327 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 TRIM60P16-201ENST00000444048 694 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 MTCYBP11-201ENST00000447254 1109 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 PPIAP27-201ENST00000453800 265 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC104849.1-201ENST00000462623 405 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC090602.1-201ENST00000469695 252 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 SSR3-208ENST00000496050 579 ntTSL 4 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC084759.1-201ENST00000561168 290 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AL132657.2-201ENST00000564417 358 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC012146.2-201ENST00000576545 416 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC008507.3-201ENST00000585753 472 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC091057.3-201ENST00000602684 733 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC002069.2-201ENST00000603580 883 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 OR51C1P-201ENST00000608504 942 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AL451049.1-201ENST00000608672 497 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 RN7SL261P-201ENST00000613441 282 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC068880.4-201ENST00000623082 495 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC013437.2-201ENST00000639587 677 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 AC007342.5-201ENST00000571340 2142 ntBASIC6.2□□□□□ -1.42
DKK3Q9UBP4 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
DKK3Q9UBP4 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 HDAC1P2-201ENST00000453661 1398 ntBASIC6.19□□□□□ -1.42
DKK3Q9UBP4 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 AL359091.1-201ENST00000449048 1734 ntBASIC6.19□□□□□ -1.42
DKK3Q9UBP4 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 CDC27P2-201ENST00000425026 1922 ntBASIC6.19□□□□□ -1.42
DKK3Q9UBP4 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.19□□□□□ -1.42
DKK3Q9UBP4 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms