Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 NLRP3P1-201ENST00000622303 1785 ntBASIC7.02□□□□□ -1.29
SHANK3Q9BYB0 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
SHANK3Q9BYB0 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
SHANK3Q9BYB0 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
SHANK3Q9BYB0 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
SHANK3Q9BYB0 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC7.02□□□□□ -1.29
SHANK3Q9BYB0 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC7.02□□□□□ -1.29
SHANK3Q9BYB0 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
SHANK3Q9BYB0 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 RN7SKP21-201ENST00000516503 220 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 AC021006.3-201ENST00000530771 192 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 RNA5SP123-201ENST00000363244 119 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 SNORA51.8-201ENST00000384234 132 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 AC096921.1-201ENST00000411661 375 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 RPS17P17-201ENST00000419392 409 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 RN7SL423P-201ENST00000486202 304 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 GTF2F2P1-201ENST00000511083 675 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 GTF2IP11-201ENST00000526931 420 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 AL034408.1-201ENST00000637712 664 ntBASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC7.01□□□□□ -1.29
SHANK3Q9BYB0 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 CASC19-221ENST00000641309 1382 ntBASIC7□□□□□ -1.29
SHANK3Q9BYB0 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 AC022164.1-201ENST00000568767 2673 ntBASIC7□□□□□ -1.29
SHANK3Q9BYB0 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 RNU1-136P-201ENST00000384181 164 ntBASIC7□□□□□ -1.29
SHANK3Q9BYB0 COX6B1P1-201ENST00000415962 213 ntBASIC7□□□□□ -1.29
SHANK3Q9BYB0 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 RSL24D1P6-201ENST00000426934 401 ntBASIC7□□□□□ -1.29
SHANK3Q9BYB0 AC093414.1-201ENST00000434712 514 ntBASIC7□□□□□ -1.29
SHANK3Q9BYB0 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 AC005084.1-201ENST00000605160 304 ntBASIC7□□□□□ -1.29
SHANK3Q9BYB0 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 AC068870.1-201ENST00000563737 2455 ntBASIC7□□□□□ -1.29
SHANK3Q9BYB0 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 IRF5P1-201ENST00000504852 2164 ntBASIC7□□□□□ -1.29
SHANK3Q9BYB0 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC7□□□□□ -1.29
SHANK3Q9BYB0 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
SHANK3Q9BYB0 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 RN7SKP149-201ENST00000363008 344 ntBASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 AL353625.1-202ENST00000366273 571 ntBASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 SNORA11F-201ENST00000408237 128 ntBASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 ATP5LP5-201ENST00000483050 299 ntBASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.99□□□□□ -1.29
SHANK3Q9BYB0 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms