Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 FRG2FP-204ENST00000453982 852 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC023424.1-201ENST00000496058 459 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 RNU6-513P-201ENST00000516104 104 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 RNA5SP271-201ENST00000516700 88 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 HMGN2P36-201ENST00000529541 409 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 AL163952.1-202ENST00000569625 600 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 AL513327.3-201ENST00000602618 469 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC015849.6-201ENST00000605454 474 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 AL359742.1-201ENST00000622497 540 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 OR8G3P-202ENST00000641572 1255 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 AP001029.2-203ENST00000589795 4910 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 TRAV35-201ENST00000390462 330 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 SNORA81-201ENST00000408493 178 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC244033.1-201ENST00000426826 870 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 GAPDHP48-201ENST00000436626 961 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AL512637.1-201ENST00000439523 1231 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 RPS10P18-201ENST00000442662 495 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 AP006222.1-205ENST00000450734 457 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC105384.2-201ENST00000508433 640 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC139365.2-201ENST00000517972 253 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 ZNF322P1-201ENST00000568013 1209 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC006272.2-201ENST00000594725 163 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 COX6CP7-201ENST00000597056 208 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC008833.1-201ENST00000611633 691 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AL096712.1-201ENST00000614561 159 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 MIR1910-201ENST00000636955 80 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 AC132825.8-201ENST00000640783 297 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 PROS2P-201ENST00000474651 1951 ntBASIC5.07□□□□□ -1.6
SKA3Q8IX90 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
SKA3Q8IX90 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
SKA3Q8IX90 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 NEPNP-201ENST00000404786 1371 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 HMGN1P20-201ENST00000411849 300 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AL357752.1-201ENST00000412817 349 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC245060.4-201ENST00000413293 1121 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 HSPE1P16-201ENST00000426640 348 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC138761.5-201ENST00000433967 325 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC013410.1-201ENST00000436223 1232 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC011476.1-201ENST00000466725 307 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC069304.1-201ENST00000491593 704 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 GOLGA5P1-201ENST00000507317 980 ntBASIC5.06□□□□□ -1.6
SKA3Q8IX90 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.06□□□□□ -1.6
SKA3Q8IX90 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms