Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC006463.2-201ENST00000473326 348 ntBASIC6.75□□□□□ -1.33
COL5A3P25940 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6.75□□□□□ -1.33
COL5A3P25940 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.75□□□□□ -1.33
COL5A3P25940 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC6.75□□□□□ -1.33
COL5A3P25940 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.75□□□□□ -1.33
COL5A3P25940 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.75□□□□□ -1.33
COL5A3P25940 ADGRF5-202ENST00000283296 5810 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
COL5A3P25940 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL5A3P25940 AL359195.2-201ENST00000623657 4412 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL5A3P25940 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
COL5A3P25940 MAK-202ENST00000354489 3941 ntTSL 5 BASIC6.74□□□□□ -1.33
COL5A3P25940 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL5A3P25940 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL5A3P25940 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.74□□□□□ -1.33
COL5A3P25940 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC6.74□□□□□ -1.33
COL5A3P25940 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC6.74□□□□□ -1.33
COL5A3P25940 RPL31P44-201ENST00000447680 377 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 AC073264.2-201ENST00000448886 166 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 CEACAMP10-202ENST00000495431 496 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 BTF3P13-201ENST00000513224 490 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.74□□□□□ -1.33
COL5A3P25940 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC6.74□□□□□ -1.33
COL5A3P25940 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.74□□□□□ -1.33
COL5A3P25940 AC009237.13-201ENST00000603193 276 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 AC232271.1-201ENST00000602455 2715 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL5A3P25940 EPS15P1-202ENST00000459691 2071 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL5A3P25940 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL5A3P25940 MIPEPP2-201ENST00000422560 1819 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
COL5A3P25940 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL5A3P25940 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL5A3P25940 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC6.74□□□□□ -1.33
COL5A3P25940 AC114774.1-201ENST00000507410 1770 ntBASIC6.74□□□□□ -1.33
COL5A3P25940 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
COL5A3P25940 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 CHMP1B2P-201ENST00000399581 597 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 RPS4XP16-201ENST00000427198 791 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 CEACAMP9-201ENST00000442990 513 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 SNORD125-201ENST00000459538 96 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 AP000797.2-201ENST00000475768 606 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.73□□□□□ -1.33
COL5A3P25940 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC6.73□□□□□ -1.33
COL5A3P25940 MEMO1P5-201ENST00000604810 406 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 EIF3FP1-201ENST00000613970 806 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 AP000346.3-201ENST00000622821 210 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.73□□□□□ -1.33
COL5A3P25940 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.73□□□□□ -1.33
COL5A3P25940 AC011933.2-201ENST00000578539 2790 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL5A3P25940 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
COL5A3P25940 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 RNA5SP428-201ENST00000365129 132 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 USP9YP9-201ENST00000429406 715 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.73□□□□□ -1.33
COL5A3P25940 AL513533.1-201ENST00000453728 415 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.73□□□□□ -1.33
COL5A3P25940 MIR4270-201ENST00000581799 70 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 AC068790.4-201ENST00000602474 263 ntBASIC6.73□□□□□ -1.33
COL5A3P25940 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC6.72□□□□□ -1.33
COL5A3P25940 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.72□□□□□ -1.33
COL5A3P25940 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.72□□□□□ -1.33
COL5A3P25940 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL5A3P25940 AC068769.1-201ENST00000474767 2426 ntBASIC6.72□□□□□ -1.33
COL5A3P25940 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
COL5A3P25940 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.72□□□□□ -1.33
COL5A3P25940 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms