Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC008543.1-201ENST00000344893 3383 ntTSL 2 BASIC8.29□□□□□ -1.08
COL9A1P20849 PBRM1-208ENST00000410007 4905 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 ZNF185-203ENST00000324823 3597 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 NBPF9-202ENST00000584027 5034 ntAPPRIS P2 TSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 LINC00672-201ENST00000583195 3692 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 RUNX1T1-250ENST00000614812 7483 ntAPPRIS P3 TSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 PHACTR1-205ENST00000379350 4784 ntTSL 2 BASIC8.29□□□□□ -1.08
COL9A1P20849 FOXN3-202ENST00000345097 7832 ntAPPRIS ALT1 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 OR11H4-201ENST00000315409 1082 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 OR7A17-201ENST00000327462 1127 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
COL9A1P20849 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
COL9A1P20849 RPL7P26-201ENST00000333817 754 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
COL9A1P20849 Y_RNA.135-201ENST00000363439 95 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 RN7SKP50-201ENST00000364694 315 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 PKIB-203ENST00000368446 556 ntTSL 2 BASIC8.29□□□□□ -1.08
COL9A1P20849 FABP9-201ENST00000379071 497 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
COL9A1P20849 RNU6-1062P-201ENST00000383908 107 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
COL9A1P20849 RNU6-1158P-201ENST00000391167 107 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 IYD-205ENST00000392256 882 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC008155.1-201ENST00000421078 329 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC8.29□□□□□ -1.08
COL9A1P20849 OR10T1P-201ENST00000424327 947 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 LINC01918-202ENST00000438148 415 ntTSL 3 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC8.29□□□□□ -1.08
COL9A1P20849 AL136380.1-201ENST00000447970 162 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 PPIAP20-201ENST00000449839 135 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 AL591379.2-201ENST00000450223 397 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 PROX1-AS1-203ENST00000451396 476 ntTSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC093799.1-201ENST00000452411 499 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 RPL26P30-201ENST00000453533 435 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 MED28P7-201ENST00000456611 530 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC013356.1-201ENST00000489027 564 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 FTH1P9-201ENST00000513251 355 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC022861.1-201ENST00000522981 663 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 AP000889.2-201ENST00000532684 490 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC009117.1-201ENST00000563948 554 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC008782.1-201ENST00000603386 430 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 AL499605.1-201ENST00000604628 403 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 AP003789.1-201ENST00000617737 605 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 AC231657.1-201ENST00000624313 397 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 AC009161.2-201ENST00000624626 138 ntBASIC8.29□□□□□ -1.08
COL9A1P20849 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
COL9A1P20849 SIRT5-205ENST00000606117 3922 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 L3MBTL3-203ENST00000368139 4148 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC019330.1-201ENST00000637390 1692 ntTSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 BHLHB9-202ENST00000372735 5130 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 NLRP4-201ENST00000301295 3670 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 MXRA5-201ENST00000217939 9793 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 SP4-201ENST00000222584 6126 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 HTR2A-201ENST00000378688 4835 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 TTC23-203ENST00000394132 3849 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 DZANK1-204ENST00000358866 3310 ntAPPRIS P2 TSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 FAM13C-214ENST00000611933 3033 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC8.29□□□□□ -1.08
COL9A1P20849 PARN-201ENST00000341484 2100 ntTSL 2 BASIC8.29□□□□□ -1.08
COL9A1P20849 FHAD1-206ENST00000375998 4355 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
COL9A1P20849 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
COL9A1P20849 SESTD1-203ENST00000428443 10615 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 MAATS1-201ENST00000273390 4433 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 CSMD1-202ENST00000400186 10938 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 CSMD1-217ENST00000602723 10938 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 RCBTB1-202ENST00000378302 4033 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 CSNK1G1-201ENST00000303052 8179 ntAPPRIS P2 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 PAPD4-204ENST00000453514 3523 ntAPPRIS P3 TSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 AC104574.2-201ENST00000559783 1985 ntTSL 3 BASIC8.28□□□□□ -1.08
COL9A1P20849 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
COL9A1P20849 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 FAM107B-201ENST00000181796 3785 ntTSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 ZNF174-203ENST00000571936 1586 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 DNAI1-201ENST00000242317 2504 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 CYP4A22-203ENST00000371891 2535 ntAPPRIS P2 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 RCAN1-210ENST00000487990 2520 ntTSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 PIEZO2-210ENST00000580640 8334 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
COL9A1P20849 RASSF6-203ENST00000342081 4331 ntAPPRIS P4 TSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 GOLGA8B-201ENST00000342314 4335 ntAPPRIS P2 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 JADE1-202ENST00000413543 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 PIP-201ENST00000291009 585 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 JAKMIP2-202ENST00000333010 2992 ntTSL 2 BASIC8.28□□□□□ -1.08
COL9A1P20849 Y_RNA.112-201ENST00000363250 102 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 AC068050.1-201ENST00000394891 380 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
COL9A1P20849 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
COL9A1P20849 AC005517.2-201ENST00000424673 553 ntBASIC8.28□□□□□ -1.08
COL9A1P20849 RPL12P4-201ENST00000432629 497 ntBASIC8.28□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms