Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 TTC41P-205ENST00000551270 3963 ntBASIC7.59□□□□□ -1.2
LIG1P18858 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC7.59□□□□□ -1.2
LIG1P18858 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC7.59□□□□□ -1.2
LIG1P18858 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.2
LIG1P18858 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC7.59□□□□□ -1.2
LIG1P18858 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC7.59□□□□□ -1.2
LIG1P18858 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.2
LIG1P18858 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG1P18858 AP003486.1-201ENST00000525716 3994 ntBASIC7.58□□□□□ -1.2
LIG1P18858 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 CASC19-228ENST00000641414 1684 ntBASIC7.58□□□□□ -1.2
LIG1P18858 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 AC020658.2-201ENST00000559030 4020 ntBASIC7.58□□□□□ -1.2
LIG1P18858 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 OR10D1P-201ENST00000355343 936 ntBASIC7.58□□□□□ -1.2
LIG1P18858 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 SNORD116-12-201ENST00000384468 92 ntBASIC7.58□□□□□ -1.2
LIG1P18858 RNU6-796P-201ENST00000391086 107 ntBASIC7.58□□□□□ -1.2
LIG1P18858 MIR4435-2HG-203ENST00000409569 514 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 RN7SKP205-201ENST00000410999 307 ntBASIC7.58□□□□□ -1.2
LIG1P18858 MTCO3P41-201ENST00000414801 328 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG1P18858 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG1P18858 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG1P18858 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG1P18858 AC097721.1-201ENST00000427150 1253 ntBASIC7.58□□□□□ -1.2
LIG1P18858 BX119904.1-201ENST00000432026 348 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AL590128.1-201ENST00000433407 286 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG1P18858 PSMD8P1-201ENST00000436275 769 ntBASIC7.58□□□□□ -1.2
LIG1P18858 MTCO2P16-201ENST00000436962 677 ntBASIC7.58□□□□□ -1.2
LIG1P18858 HMGN1P32-201ENST00000441744 256 ntBASIC7.58□□□□□ -1.2
LIG1P18858 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG1P18858 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG1P18858 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 Z95152.1-201ENST00000453556 656 ntBASIC7.58□□□□□ -1.2
LIG1P18858 UOX-201ENST00000471089 899 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AC108734.3-201ENST00000481241 1165 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC7.58□□□□□ -1.2
LIG1P18858 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG1P18858 RNA5SP278-201ENST00000517055 102 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC7.58□□□□□ -1.2
LIG1P18858 AC006518.2-201ENST00000542513 940 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AC106785.4-201ENST00000569492 412 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG1P18858 AC067959.1-201ENST00000604334 379 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AC013468.1-201ENST00000608680 598 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AL008582.1-201ENST00000609612 442 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AC009163.6-201ENST00000612367 342 ntBASIC7.58□□□□□ -1.2
LIG1P18858 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC7.58□□□□□ -1.2
LIG1P18858 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC7.58□□□□□ -1.2
LIG1P18858 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC7.58□□□□□ -1.2
LIG1P18858 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 AC018659.2-201ENST00000624690 715 ntBASIC7.58□□□□□ -1.2
LIG1P18858 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC7.58□□□□□ -1.2
LIG1P18858 AC027559.1-201ENST00000636288 271 ntBASIC7.58□□□□□ -1.2
LIG1P18858 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC7.58□□□□□ -1.2
LIG1P18858 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
LIG1P18858 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 AL359715.3-201ENST00000569267 2123 ntBASIC7.58□□□□□ -1.2
LIG1P18858 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
LIG1P18858 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIG1P18858 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC7.58□□□□□ -1.2
LIG1P18858 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC7.58□□□□□ -1.2
LIG1P18858 AC010168.2-201ENST00000562691 5428 ntBASIC7.57□□□□□ -1.2
LIG1P18858 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG1P18858 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
LIG1P18858 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG1P18858 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG1P18858 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG1P18858 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG1P18858 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG1P18858 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC7.57□□□□□ -1.2
LIG1P18858 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG1P18858 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIG1P18858 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG1P18858 LINC01252-201ENST00000499291 3673 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIG1P18858 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC7.57□□□□□ -1.2
LIG1P18858 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG1P18858 AL079341.1-201ENST00000404701 1207 ntBASIC7.57□□□□□ -1.2
LIG1P18858 AL451046.1-201ENST00000406097 534 ntBASIC7.57□□□□□ -1.2
LIG1P18858 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG1P18858 TEX41-202ENST00000414256 604 ntTSL 5 BASIC7.57□□□□□ -1.2
LIG1P18858 UBE2V1P10-201ENST00000414685 269 ntBASIC7.57□□□□□ -1.2
LIG1P18858 AL663061.1-201ENST00000416625 580 ntBASIC7.57□□□□□ -1.2
LIG1P18858 ELOCP9-201ENST00000418624 239 ntBASIC7.57□□□□□ -1.2
LIG1P18858 RPF2P1-201ENST00000424137 906 ntBASIC7.57□□□□□ -1.2
LIG1P18858 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC7.57□□□□□ -1.2
LIG1P18858 AL160175.1-201ENST00000428124 247 ntBASIC7.57□□□□□ -1.2
LIG1P18858 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG1P18858 EEF1A1P39-201ENST00000440791 250 ntBASIC7.57□□□□□ -1.2
LIG1P18858 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC7.57□□□□□ -1.2
LIG1P18858 AL354714.5-201ENST00000450131 590 ntBASIC7.57□□□□□ -1.2
LIG1P18858 AC005410.1-202ENST00000460347 485 ntBASIC7.57□□□□□ -1.2
LIG1P18858 AC063955.1-201ENST00000462872 685 ntBASIC7.57□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms