Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.84□□□□□ -1.47
TM9SF3Q9HD45 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC5.84□□□□□ -1.47
TM9SF3Q9HD45 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TM9SF3Q9HD45 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
TM9SF3Q9HD45 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
TM9SF3Q9HD45 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
TM9SF3Q9HD45 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.84□□□□□ -1.47
TM9SF3Q9HD45 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
TM9SF3Q9HD45 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
TM9SF3Q9HD45 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.84□□□□□ -1.48
TM9SF3Q9HD45 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.84□□□□□ -1.48
TM9SF3Q9HD45 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
TM9SF3Q9HD45 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 MTCO1P46-201ENST00000451639 1491 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC112255.1-201ENST00000624070 2493 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC016583.1-201ENST00000624221 2431 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 MIR133A2-201ENST00000347538 102 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 SNORD1C-201ENST00000363315 78 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 RN7SKP162-201ENST00000363605 345 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 RN7SKP17-201ENST00000411242 351 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 PTCD2P2-201ENST00000415579 1095 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AL355433.1-201ENST00000422804 300 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC099677.3-201ENST00000427081 395 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 RPSAP41-201ENST00000439695 860 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 RPS17P15-201ENST00000475609 349 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC022215.1-201ENST00000481770 362 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 IGBP1P1-201ENST00000554337 1009 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 SUMO2P15-201ENST00000604285 278 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC145423.1-201ENST00000605712 336 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AL035661.1-201ENST00000620459 1144 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC099654.6-201ENST00000636487 512 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC000095.2-202ENST00000637415 154 ntBASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
TM9SF3Q9HD45 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 SAMM50P1-201ENST00000455403 1399 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 OR9K1P-201ENST00000326513 941 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 U3.23-201ENST00000391132 200 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 SNORA81-201ENST00000408493 178 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AL596448.1-201ENST00000415024 392 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AL354868.1-201ENST00000417077 482 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AL590399.2-201ENST00000427536 309 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 SDC4P-201ENST00000453285 601 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 SIAH1P1-201ENST00000479411 923 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 RPL23AP40-201ENST00000487630 390 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AC108693.1-201ENST00000496068 432 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 CCDC11P1-201ENST00000503137 1162 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 RNU6-615P-201ENST00000516065 106 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 TXNP4-201ENST00000575018 310 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 CU639417.4-201ENST00000623928 207 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 OR11H2-202ENST00000641517 1085 ntBASIC5.82□□□□□ -1.48
TM9SF3Q9HD45 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms