Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL121594.2-201ENST00000541658 472 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC068993.1-201ENST00000546724 589 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC092121.1-201ENST00000569452 202 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL031601.1-201ENST00000605702 394 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AC108865.2-201ENST00000606881 432 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 AL354950.1-201ENST00000614150 568 ntBASIC5.1□□□□□ -1.59
SKA3Q8IX90 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
SKA3Q8IX90 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SKA3Q8IX90 MFSD8-239ENST00000641590 2479 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
SKA3Q8IX90 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SKA3Q8IX90 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SKA3Q8IX90 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SKA3Q8IX90 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SKA3Q8IX90 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SKA3Q8IX90 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SKA3Q8IX90 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SKA3Q8IX90 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SKA3Q8IX90 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 U3.10-201ENST00000364459 214 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 RAB5CP1-201ENST00000395972 580 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 AL355994.1-201ENST00000424379 260 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 CRIP1P1-201ENST00000427567 185 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 AL138899.2-201ENST00000439139 499 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 AL161722.1-201ENST00000446972 1032 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 AC111000.6-201ENST00000514471 709 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 TMEM97P2-201ENST00000517841 403 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 AC027026.1-201ENST00000532323 742 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 NANOGNBP2-201ENST00000544753 553 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 AC005726.4-201ENST00000582858 458 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 FAM72A-208ENST00000607379 1139 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 AL133481.2-203ENST00000607558 139 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 AC129915.3-201ENST00000634128 948 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 AC138627.1-204ENST00000641894 765 ntBASIC5.09□□□□□ -1.59
SKA3Q8IX90 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
SKA3Q8IX90 AL137058.3-201ENST00000624531 3099 ntBASIC5.09□□□□□ -1.6
SKA3Q8IX90 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
SKA3Q8IX90 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
SKA3Q8IX90 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.6
SKA3Q8IX90 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SKA3Q8IX90 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
SKA3Q8IX90 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SKA3Q8IX90 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
SKA3Q8IX90 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.6
SKA3Q8IX90 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 TCP1P3-201ENST00000414406 1498 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC117409.1-201ENST00000470499 1310 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC239868.2-201ENST00000564237 4527 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 LYPLA1P3-201ENST00000402650 695 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC019205.1-201ENST00000421830 730 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SKA3Q8IX90 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 OR6C71P-201ENST00000432580 913 ntBASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.08□□□□□ -1.6
SKA3Q8IX90 AC092106.1-201ENST00000444291 373 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms