Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 BX284632.2-201ENST00000421091 399 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC009784.1-201ENST00000426484 460 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 FAR1P1-201ENST00000427163 934 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 VDAC1P6-201ENST00000430062 855 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 CFL1P1-202ENST00000432948 411 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC002504.1-201ENST00000438281 691 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 VN1R110P-201ENST00000438988 971 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AL512605.1-202ENST00000441919 381 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 SEPT14P12-201ENST00000442280 560 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 SPRYD7P1-201ENST00000443861 570 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AL512593.1-201ENST00000444758 779 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AL359955.2-201ENST00000445380 353 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC073909.1-201ENST00000447112 999 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 MTND5P8-201ENST00000449817 1083 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 COPS8P2-201ENST00000473228 627 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 RN7SL727P-201ENST00000482164 296 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC106800.3-201ENST00000511389 308 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 WBP1LP3-201ENST00000523033 208 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 IGHV1-14-201ENST00000523391 241 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 OR4A46P-201ENST00000527255 933 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AP000648.1-201ENST00000529682 397 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC074050.1-201ENST00000563247 211 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AP001496.3-201ENST00000580230 913 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AP002884.5-201ENST00000595053 1132 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AL031601.1-201ENST00000605702 394 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AL109620.1-201ENST00000618738 1197 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC009120.7-201ENST00000623452 780 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 OR10AB1P-202ENST00000641219 1686 ntBASIC5.84□□□□□ -1.47
COL28A1Q2UY09 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL28A1Q2UY09 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC5.84□□□□□ -1.48
COL28A1Q2UY09 AC105749.1-201ENST00000631338 2008 ntBASIC5.84□□□□□ -1.48
COL28A1Q2UY09 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL28A1Q2UY09 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL28A1Q2UY09 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL28A1Q2UY09 AC232271.1-201ENST00000602455 2715 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 NLRP3P1-201ENST00000622303 1785 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC112255.1-201ENST00000624070 2493 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 MIR375-201ENST00000362103 64 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 SNORD8-201ENST00000363915 110 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 RNU6-316P-201ENST00000391027 107 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AL360271.1-201ENST00000395679 510 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AMZ2P2-201ENST00000406819 1057 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 RN7SKP125-201ENST00000410481 302 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC116036.1-201ENST00000412199 367 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC245096.1-201ENST00000413104 546 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC017078.1-201ENST00000416146 368 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 SRSF1P1-201ENST00000424058 520 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC097721.1-201ENST00000427150 1253 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC009237.1-201ENST00000442127 744 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC022336.1-201ENST00000475510 337 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 RN7SL714P-201ENST00000487050 298 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC093267.1-201ENST00000489176 961 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 RPL37AP8-201ENST00000494116 276 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC109481.1-201ENST00000509173 282 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC073916.1-201ENST00000545095 130 ntBASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.83□□□□□ -1.48
COL28A1Q2UY09 AC104785.1-201ENST00000603220 588 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms