Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.82□□□□□ -1.32
SMARCA1P28370 AC120053.1-201ENST00000607706 736 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 AC104763.3-201ENST00000613765 618 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 AC005224.3-201ENST00000584683 2140 ntBASIC6.82□□□□□ -1.32
SMARCA1P28370 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.82□□□□□ -1.32
SMARCA1P28370 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.82□□□□□ -1.32
SMARCA1P28370 HSPA8P19-201ENST00000505359 1517 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
SMARCA1P28370 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
SMARCA1P28370 AC005225.5-201ENST00000623547 2225 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
SMARCA1P28370 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
SMARCA1P28370 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.81□□□□□ -1.32
SMARCA1P28370 TMSB4XP2-201ENST00000335179 210 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AL353625.1-202ENST00000366273 571 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.81□□□□□ -1.32
SMARCA1P28370 GCNT6-201ENST00000379591 934 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
SMARCA1P28370 SNORA70.9-201ENST00000384370 135 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
SMARCA1P28370 AL356057.1-202ENST00000402263 756 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 RSL24D1P1-201ENST00000404972 493 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 RPS3AP2-201ENST00000407190 754 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AC019205.1-201ENST00000421830 730 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.81□□□□□ -1.32
SMARCA1P28370 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.81□□□□□ -1.32
SMARCA1P28370 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
SMARCA1P28370 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.81□□□□□ -1.32
SMARCA1P28370 PCBP2P1-201ENST00000437262 977 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AC096775.1-201ENST00000437724 448 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC6.81□□□□□ -1.32
SMARCA1P28370 ACA64.1-201ENST00000459171 127 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SMARCA1P28370 RPL38P3-201ENST00000484463 213 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.81□□□□□ -1.32
SMARCA1P28370 TRBV5-2-201ENST00000489095 273 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.81□□□□□ -1.32
SMARCA1P28370 TOMM22P4-201ENST00000511318 336 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.81□□□□□ -1.32
SMARCA1P28370 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.81□□□□□ -1.32
SMARCA1P28370 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC6.81□□□□□ -1.32
SMARCA1P28370 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC6.81□□□□□ -1.32
SMARCA1P28370 AC027281.1-201ENST00000574178 758 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 TXNP4-201ENST00000575018 310 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.81□□□□□ -1.32
SMARCA1P28370 AC125494.2-201ENST00000602431 657 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AL450270.1-201ENST00000606160 391 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AC018645.2-201ENST00000609151 472 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AL138960.1-201ENST00000613838 513 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 MIR6861-201ENST00000618657 64 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AL445493.3-201ENST00000619568 477 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 AC009269.6-201ENST00000621778 588 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 SNX18P12-201ENST00000624821 759 ntBASIC6.81□□□□□ -1.32
SMARCA1P28370 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SMARCA1P28370 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.81□□□□□ -1.32
SMARCA1P28370 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SMARCA1P28370 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC6.81□□□□□ -1.32
SMARCA1P28370 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SMARCA1P28370 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SMARCA1P28370 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.81□□□□□ -1.32
SMARCA1P28370 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.8□□□□□ -1.32
SMARCA1P28370 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 PARP4P2-201ENST00000446672 3326 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.8□□□□□ -1.32
SMARCA1P28370 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.8□□□□□ -1.32
SMARCA1P28370 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.8□□□□□ -1.32
SMARCA1P28370 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
SMARCA1P28370 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC6.8□□□□□ -1.32
SMARCA1P28370 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6.8□□□□□ -1.32
SMARCA1P28370 AL121977.1-201ENST00000401636 979 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC6.8□□□□□ -1.32
SMARCA1P28370 MTCYBP32-201ENST00000427945 1084 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 AC079807.1-201ENST00000429993 481 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC6.8□□□□□ -1.32
SMARCA1P28370 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SMARCA1P28370 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.8□□□□□ -1.32
SMARCA1P28370 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms