Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AC013268.3-201ENST00000262716 2324 ntBASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 HSPD1P8-201ENST00000400121 1658 ntBASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 USP9YP9-201ENST00000429406 715 ntBASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AC100784.1-201ENST00000522790 310 ntBASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 RN7SL356P-201ENST00000582228 248 ntBASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AL020997.2-201ENST00000602607 184 ntBASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 AL109618.2-201ENST00000605527 211 ntBASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SHANK3Q9BYB0 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 RPS3AP38-201ENST00000435889 763 ntBASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 RPS23P7-201ENST00000466210 444 ntBASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 AC058823.1-201ENST00000485315 474 ntBASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 AC026979.1-201ENST00000492525 396 ntBASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 AC009117.1-201ENST00000563948 554 ntBASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 LRRC37A2-201ENST00000333412 5177 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 AC092747.4-201ENST00000620519 1861 ntBASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
SHANK3Q9BYB0 CDK19-203ENST00000413605 6007 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 SNORD1C-201ENST00000363315 78 ntBASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC068138.1-201ENST00000412635 217 ntBASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 TEX41-205ENST00000431734 529 ntTSL 4 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC104634.1-201ENST00000452720 462 ntBASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC093824.1-201ENST00000508796 343 ntBASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC004980.4-201ENST00000513375 203 ntBASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 RPL27-207ENST00000590864 569 ntTSL 2 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC093799.2-201ENST00000610062 578 ntBASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC112694.2-201ENST00000623697 768 ntBASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC091046.3-201ENST00000631455 1574 ntBASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 AC022819.1-201ENST00000563495 3910 ntBASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SHANK3Q9BYB0 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 246.2 ms