Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC010547.6-201ENST00000571789 193 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 STARD6-202ENST00000577499 696 ntTSL 2 BASIC6.97□□□□□ -1.29
COL6A1P12109 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC6.97□□□□□ -1.29
COL6A1P12109 AC005244.1-201ENST00000582566 339 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC6.97□□□□□ -1.29
COL6A1P12109 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 AL591167.1-201ENST00000607321 456 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AL590410.1-201ENST00000617925 333 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AC096708.4-201ENST00000620563 552 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC6.97□□□□□ -1.29
COL6A1P12109 AC004943.3-201ENST00000624116 600 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AC005839.1-201ENST00000624148 3213 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.97□□□□□ -1.29
COL6A1P12109 TSHZ2-205ENST00000626626 670 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC6.97□□□□□ -1.29
COL6A1P12109 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC6.97□□□□□ -1.29
COL6A1P12109 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.97□□□□□ -1.29
COL6A1P12109 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
COL6A1P12109 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 NEK2P4-201ENST00000425793 1329 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 AL512310.3-201ENST00000547023 1335 ntBASIC6.97□□□□□ -1.29
COL6A1P12109 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC6.97□□□□□ -1.29
COL6A1P12109 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
COL6A1P12109 CASC19-228ENST00000641414 1684 ntBASIC6.96□□□□□ -1.29
COL6A1P12109 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL6A1P12109 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL6A1P12109 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL6A1P12109 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL6A1P12109 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC6.96□□□□□ -1.29
COL6A1P12109 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC6.96□□□□□ -1.29
COL6A1P12109 AC119674.1-202ENST00000641333 1860 ntBASIC6.96□□□□□ -1.29
COL6A1P12109 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL6A1P12109 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL6A1P12109 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC6.96□□□□□ -1.29
COL6A1P12109 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC6.96□□□□□ -1.29
COL6A1P12109 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL6A1P12109 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
COL6A1P12109 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC6.96□□□□□ -1.3
COL6A1P12109 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
COL6A1P12109 SNORD51.1-201ENST00000365405 77 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC6.96□□□□□ -1.3
COL6A1P12109 OR13C3-201ENST00000374781 1108 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AL445213.1-201ENST00000412589 747 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC6.96□□□□□ -1.3
COL6A1P12109 AL354890.1-201ENST00000413730 346 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AC007000.2-201ENST00000442564 487 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.96□□□□□ -1.3
COL6A1P12109 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.96□□□□□ -1.3
COL6A1P12109 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.96□□□□□ -1.3
COL6A1P12109 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 RPL32P9-201ENST00000487963 407 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 EIF3LP3-201ENST00000495197 822 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC6.96□□□□□ -1.3
COL6A1P12109 RN7SKP34-201ENST00000516142 244 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 IGHV3-57-201ENST00000520143 280 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AC074029.2-201ENST00000551045 634 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC6.96□□□□□ -1.3
COL6A1P12109 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC6.96□□□□□ -1.3
COL6A1P12109 AC106730.2-201ENST00000566641 540 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AC023824.3-201ENST00000569003 562 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC6.96□□□□□ -1.3
COL6A1P12109 AC245036.5-201ENST00000596330 847 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
COL6A1P12109 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC6.96□□□□□ -1.3
COL6A1P12109 Z94722.1-201ENST00000604328 474 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 AC006924.1-201ENST00000610750 559 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 AC130448.2-201ENST00000624082 374 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
COL6A1P12109 OR5AC4P-202ENST00000642086 985 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.96□□□□□ -1.3
COL6A1P12109 AL117339.4-201ENST00000608335 7063 ntBASIC6.96□□□□□ -1.3
COL6A1P12109 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC6.96□□□□□ -1.3
COL6A1P12109 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.96□□□□□ -1.3
COL6A1P12109 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL6A1P12109 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.3
COL6A1P12109 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.95□□□□□ -1.3
COL6A1P12109 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.95□□□□□ -1.3
COL6A1P12109 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL6A1P12109 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.95□□□□□ -1.3
COL6A1P12109 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
COL6A1P12109 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.95□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms