Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 CCDC58P3-201ENST00000590792 430 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 UBA2-208ENST00000592791 910 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AP000254.1-201ENST00000609934 520 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC010998.3-201ENST00000613871 631 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 DAPL1-204ENST00000621326 671 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC006328.2-201ENST00000623198 397 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC012005.2-201ENST00000624333 397 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC005858.3-201ENST00000624756 589 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 AL449283.1-201ENST00000602631 3403 ntBASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC7.53□□□□□ -1.2
CCDC39Q9UFE4 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.2
CCDC39Q9UFE4 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC7.52□□□□□ -1.2
CCDC39Q9UFE4 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
CCDC39Q9UFE4 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
CCDC39Q9UFE4 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 RNU6-1214P-201ENST00000363650 109 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 SNORA27.3-201ENST00000364937 134 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AL139100.1-201ENST00000408001 498 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 RPS26P38-201ENST00000414476 348 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AL121781.1-201ENST00000419863 168 ntTSL 5 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC000089.1-201ENST00000424559 801 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC021876.1-201ENST00000425959 359 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC009303.1-201ENST00000426307 352 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 MRPS33P4-201ENST00000434892 317 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 MTCO2P16-201ENST00000436962 677 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 GAPDHP20-201ENST00000444107 1007 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 MGAT2P1-201ENST00000449718 797 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 PFN2-213ENST00000494827 793 ntTSL 4 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 ATG10-AS1-201ENST00000504846 648 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC073648.3-201ENST00000504939 925 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC097451.1-201ENST00000507388 653 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 B3GNTL1P1-201ENST00000509174 289 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 CFI-204ENST00000510800 667 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC010442.1-201ENST00000515583 816 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 RERGL-202ENST00000536890 367 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 GNG2-208ENST00000554875 430 ntTSL 5 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AL356801.1-201ENST00000559320 294 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC007494.1-201ENST00000562293 760 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 ANP32BP1-202ENST00000568553 737 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 MTCO3P24-201ENST00000572729 782 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 CCL2-202ENST00000580907 736 ntTSL 2 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 RN7SL657P-201ENST00000582431 293 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC078795.2-201ENST00000602835 1252 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AC091965.4-201ENST00000607691 587 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 MIR8082-201ENST00000612488 81 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AL359740.1-201ENST00000624340 592 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 Z83818.2-201ENST00000635331 433 ntTSL 3 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 HSPD1P1-201ENST00000503199 1726 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 AL512353.3-201ENST00000417517 1326 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 PSMC1P4-201ENST00000515236 1327 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 SAMMSON-210ENST00000641260 1308 ntBASIC7.52□□□□□ -1.21
CCDC39Q9UFE4 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC022306.1-201ENST00000560489 1562 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AL161901.1-201ENST00000624954 3425 ntBASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC7.51□□□□□ -1.21
CCDC39Q9UFE4 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC7.51□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms