Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC7.74□□□□□ -1.17
CHMP4AQ9BY43 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC7.74□□□□□ -1.17
CHMP4AQ9BY43 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CHMP4AQ9BY43 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
CHMP4AQ9BY43 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC7.74□□□□□ -1.17
CHMP4AQ9BY43 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 RPL35AP3-201ENST00000414680 288 ntBASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 MTCO1P45-201ENST00000431457 267 ntBASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AC008429.4-201ENST00000521201 182 ntBASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 OTX2-203ENST00000554559 715 ntTSL 5 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AC007494.1-201ENST00000562293 760 ntBASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AC027334.1-201ENST00000603257 310 ntBASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AL137072.1-201ENST00000603444 466 ntBASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 GMCL1P2-201ENST00000605230 823 ntBASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 RMST-202ENST00000541282 2099 ntTSL 2 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 EEF1A1P21-201ENST00000512363 1344 ntBASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC7.73□□□□□ -1.17
CHMP4AQ9BY43 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC027088.4-201ENST00000611559 1947 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 DMD-228ENST00000541735 7080 ntTSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 OR10R3P-201ENST00000361688 942 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 RNU6-618P-201ENST00000363518 112 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 RN7SKP128-201ENST00000364270 303 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 NMD3P2-201ENST00000421815 761 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC079807.1-201ENST00000429993 481 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 DNAJA1P5-201ENST00000440278 943 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 BMS1P10-201ENST00000443754 1120 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AL035551.1-201ENST00000446931 348 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 CALM1P2-201ENST00000452941 448 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC099521.1-201ENST00000482557 334 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 FTH1P8-201ENST00000498161 514 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC090568.1-201ENST00000509499 856 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 GAPDHP71-201ENST00000511530 1003 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 RNA5SP340-201ENST00000517132 107 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 NANOGNBP2-201ENST00000544753 553 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC090888.3-201ENST00000558917 509 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 MIR6809-201ENST00000612189 116 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AL352984.2-202ENST00000613699 155 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 FO681491.1-202ENST00000623392 737 ntBASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC7.72□□□□□ -1.17
CHMP4AQ9BY43 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms