Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC018638.8-201ENST00000588755 281 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC008770.1-209ENST00000591898 356 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC6.83□□□□□ -1.32
COL8A1P27658 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC108451.2-201ENST00000603875 538 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC016925.2-201ENST00000605108 242 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC005084.1-201ENST00000605160 304 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 Metazoa_SRP.167-201ENST00000614947 260 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 TUG1_3.1-201ENST00000616187 237 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC087821.2-201ENST00000637086 450 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RBM18-201ENST00000417201 4974 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 DDX21-201ENST00000354185 4711 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 REG1CP-205ENST00000444841 1710 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 LINC01924-201ENST00000589376 1722 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC6.83□□□□□ -1.32
COL8A1P27658 VANGL1-202ENST00000355485 8691 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 HEATR4-201ENST00000334988 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.83□□□□□ -1.32
COL8A1P27658 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 CXCR4-202ENST00000409817 1895 ntAPPRIS P3 BASIC6.83□□□□□ -1.32
COL8A1P27658 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC6.83□□□□□ -1.32
COL8A1P27658 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 OR4P4-202ENST00000641760 2086 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC012078.1-201ENST00000405035 1646 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 XRCC6P3-201ENST00000422187 1621 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 LY75-CD302-201ENST00000504764 5650 ntAPPRIS P4 TSL 2 BASIC6.83□□□□□ -1.32
COL8A1P27658 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.82□□□□□ -1.32
COL8A1P27658 IL15-207ENST00000514653 1388 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 AC006058.1-201ENST00000568686 5067 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 ZNF3-202ENST00000299667 2799 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC012513.3-201ENST00000623250 2116 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 C9orf131-205ENST00000421362 3259 ntAPPRIS ALT2 TSL 4 BASIC6.82□□□□□ -1.32
COL8A1P27658 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 MBD3L1-201ENST00000305625 748 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC023886.2-201ENST00000321285 411 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 Y_RNA.193-201ENST00000363979 102 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 RNU6-621P-201ENST00000364752 109 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 RNA5SP396-201ENST00000364834 120 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 Y_RNA.311-201ENST00000365068 96 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 SNORD42.2-201ENST00000365570 69 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 RNU6-185P-201ENST00000384421 107 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC121334.1-201ENST00000396414 802 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 PTMAP8-201ENST00000397729 342 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 AL512422.1-201ENST00000407033 553 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 RBMY2GP-201ENST00000418671 1034 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 AF274573.1-201ENST00000430535 494 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 RBMY2NP-201ENST00000434454 1028 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 LINC00460-201ENST00000435024 631 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 HMGN1P32-201ENST00000441744 256 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 PSPC1P1-201ENST00000442352 665 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC6.82□□□□□ -1.32
COL8A1P27658 BUD31P2-201ENST00000449374 300 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AL357127.1-201ENST00000451295 438 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 NDUFA5P7-201ENST00000452914 242 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 OR7E7P-201ENST00000455678 1012 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 Y_RNA.639-201ENST00000458981 102 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 ABRACL-202ENST00000461027 456 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 RPS4XP12-201ENST00000461747 709 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AC023598.1-201ENST00000472521 361 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 RN7SL790P-201ENST00000474043 298 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC091544.1-201ENST00000484702 348 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AL163540.1-201ENST00000485382 386 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL8A1P27658 AC107952.1-201ENST00000524200 376 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC104009.1-201ENST00000528009 635 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC6.82□□□□□ -1.32
COL8A1P27658 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC079384.1-201ENST00000548506 600 ntTSL 4 BASIC6.82□□□□□ -1.32
COL8A1P27658 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC6.82□□□□□ -1.32
COL8A1P27658 AC127029.1-201ENST00000560822 237 ntBASIC6.82□□□□□ -1.32
COL8A1P27658 AC023813.3-201ENST00000561876 539 ntTSL 3 BASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms