Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXA3O43365 RPS11-205ENST00000599561 430 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC092653.1-201ENST00000608509 531 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC022306.2-201ENST00000617563 647 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 RBM12B-AS1-201ENST00000623283 653 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 AC090582.1-201ENST00000636321 199 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXA3O43365 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 RAD17P2-201ENST00000451754 1977 ntBASIC5.6□□□□□ -1.51
HOXA3O43365 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXA3O43365 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXA3O43365 TTC39DP-201ENST00000416781 1688 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXA3O43365 AC090771.1-201ENST00000585803 1618 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 ATP5BP1-201ENST00000411980 1574 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXA3O43365 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
HOXA3O43365 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXA3O43365 AC090181.3-201ENST00000624777 1514 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXA3O43365 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXA3O43365 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXA3O43365 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
HOXA3O43365 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
HOXA3O43365 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXA3O43365 AL137918.1-201ENST00000624542 1922 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 CCL2-201ENST00000225831 741 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXA3O43365 AC023490.2-201ENST00000359859 470 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 SNORA7A-201ENST00000384765 139 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXA3O43365 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXA3O43365 RPL24P2-201ENST00000421023 475 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 RPL21P43-201ENST00000425440 472 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXA3O43365 AC010148.1-201ENST00000427619 707 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXA3O43365 AL121916.1-201ENST00000429405 308 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 AC002542.1-201ENST00000440683 193 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXA3O43365 AL445991.1-201ENST00000450381 475 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXA3O43365 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 MEF2AP1-201ENST00000454867 863 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXA3O43365 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXA3O43365 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXA3O43365 AC084754.1-201ENST00000463466 464 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 RN7SL393P-201ENST00000463588 296 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 XACT-201ENST00000468762 497 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC5.59□□□□□ -1.51
HOXA3O43365 RN7SL37P-201ENST00000490461 307 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC104971.1-201ENST00000495117 578 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC114324.2-202ENST00000503812 134 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 AC116353.3-201ENST00000511215 249 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXA3O43365 MTCYBP44-201ENST00000514835 823 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC138517.1-201ENST00000515724 568 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXA3O43365 GTF2IP11-201ENST00000526931 420 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AP000619.3-201ENST00000535634 1127 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.59□□□□□ -1.51
HOXA3O43365 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 OR5BK1P-201ENST00000550421 823 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC027104.1-201ENST00000563702 681 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AGGF1P4-201ENST00000568249 801 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 MTCO1P40-201ENST00000574371 625 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXA3O43365 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.59□□□□□ -1.51
HOXA3O43365 AP001542.2-201ENST00000593141 364 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 CLPTM1LP1-201ENST00000604519 484 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC096553.1-201ENST00000605169 829 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AL158063.1-201ENST00000615349 536 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 MIR6503-201ENST00000622884 86 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AC025262.3-201ENST00000623666 360 ntBASIC5.59□□□□□ -1.51
HOXA3O43365 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXA3O43365 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXA3O43365 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms