Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 AC016712.1-201ENST00000431088 378 ntBASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 AC126615.2-201ENST00000553003 515 ntBASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC6.9□□□□□ -1.3
CCDC88AQ3V6T2 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 MTND4LP17-201ENST00000414607 293 ntBASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 RPS17P17-201ENST00000419392 409 ntBASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 SLC25A51P1-201ENST00000468432 871 ntBASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 CEACAMP10-202ENST00000495431 496 ntBASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 AC006116.3-201ENST00000592968 361 ntBASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 AC009704.2-201ENST00000618739 483 ntBASIC6.9□□□□□ -1.31
CCDC88AQ3V6T2 AC131971.1-201ENST00000332881 1482 ntBASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 AC005725.1-201ENST00000577346 2607 ntBASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 FAM96AP1-201ENST00000430879 482 ntBASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 CEACAMP9-201ENST00000442990 513 ntBASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 AC009831.5-201ENST00000624000 3189 ntBASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 ZNF101P1-201ENST00000435701 1720 ntBASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC6.89□□□□□ -1.31
CCDC88AQ3V6T2 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC093829.1-201ENST00000506662 1618 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 RNA5SP505-201ENST00000364748 108 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC104837.2-201ENST00000427236 424 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC073410.1-201ENST00000435125 589 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC006463.2-201ENST00000473326 348 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 RPL37AP8-201ENST00000494116 276 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC127381.1-201ENST00000555979 939 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC209154.1-201ENST00000582156 337 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC087385.3-201ENST00000620477 187 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC6.88□□□□□ -1.31
CCDC88AQ3V6T2 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms