Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A4P53420 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 SVIL-202ENST00000375398 8201 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
COL4A4P53420 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A4P53420 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A4P53420 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A4P53420 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A4P53420 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.95□□□□□ -1.46
COL4A4P53420 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.95□□□□□ -1.46
COL4A4P53420 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A4P53420 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A4P53420 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.94□□□□□ -1.46
COL4A4P53420 RPL7P56-201ENST00000429441 717 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 RN7SL817P-201ENST00000480777 288 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.94□□□□□ -1.46
COL4A4P53420 AC074255.1-201ENST00000511259 501 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 RN7SKP67-201ENST00000515905 235 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 AC024940.3-201ENST00000538551 316 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 AC063949.1-201ENST00000552900 865 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 AP001357.1-201ENST00000586304 1053 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 HIRAP1-201ENST00000605318 787 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 AC010245.2-201ENST00000606908 1167 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.94□□□□□ -1.46
COL4A4P53420 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.94□□□□□ -1.46
COL4A4P53420 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.94□□□□□ -1.46
COL4A4P53420 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC5.94□□□□□ -1.46
COL4A4P53420 RNU1-43P-201ENST00000365052 165 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.94□□□□□ -1.46
COL4A4P53420 RPL34P27-201ENST00000428810 349 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A4P53420 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.94□□□□□ -1.46
COL4A4P53420 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.94□□□□□ -1.46
COL4A4P53420 CEACAMP10-202ENST00000495431 496 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 DPPA3P2-202ENST00000557188 1219 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 AC060780.2-201ENST00000589047 198 ntBASIC5.94□□□□□ -1.46
COL4A4P53420 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC5.94□□□□□ -1.46
COL4A4P53420 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A4P53420 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC5.93□□□□□ -1.46
COL4A4P53420 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC5.93□□□□□ -1.46
COL4A4P53420 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.93□□□□□ -1.46
COL4A4P53420 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 RNA5SP326-201ENST00000363209 110 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL4A4P53420 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.93□□□□□ -1.46
COL4A4P53420 RN7SKP126-201ENST00000411143 300 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC5.93□□□□□ -1.46
COL4A4P53420 LDHAP2-201ENST00000437325 985 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 AC006466.1-201ENST00000438721 289 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.93□□□□□ -1.46
COL4A4P53420 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.93□□□□□ -1.46
COL4A4P53420 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.93□□□□□ -1.46
COL4A4P53420 RNU1-88P-201ENST00000459274 128 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 DUTP1-201ENST00000493631 470 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.93□□□□□ -1.46
COL4A4P53420 PRELID3BP5-201ENST00000508612 460 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.93□□□□□ -1.46
COL4A4P53420 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.93□□□□□ -1.46
COL4A4P53420 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.93□□□□□ -1.46
COL4A4P53420 AC008745.1-201ENST00000604064 271 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.93□□□□□ -1.46
COL4A4P53420 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.93□□□□□ -1.46
COL4A4P53420 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL4A4P53420 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms