Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 EEF1B2P1-201ENST00000567221 672 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC7.2□□□□□ -1.26
LIG3P49916 AC104984.3-201ENST00000581946 546 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 AC004987.4-201ENST00000603383 338 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 AC107304.1-201ENST00000604229 296 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AC092960.1-201ENST00000604762 351 ntBASIC7.2□□□□□ -1.26
LIG3P49916 RN7SKP299-201ENST00000606679 301 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 VN1R74P-201ENST00000613259 503 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AF246928.1-201ENST00000623768 87 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC7.2□□□□□ -1.26
LIG3P49916 AL356585.10-201ENST00000641883 123 ntBASIC7.2□□□□□ -1.26
LIG3P49916 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIG3P49916 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
LIG3P49916 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC7.2□□□□□ -1.26
LIG3P49916 KYNUP2-201ENST00000582280 1329 ntBASIC7.2□□□□□ -1.26
LIG3P49916 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC7.2□□□□□ -1.26
LIG3P49916 AC112255.1-201ENST00000624070 2493 ntBASIC7.2□□□□□ -1.26
LIG3P49916 NAMPTP1-201ENST00000440465 2514 ntBASIC7.2□□□□□ -1.26
LIG3P49916 AC006600.2-201ENST00000624834 2506 ntBASIC7.2□□□□□ -1.26
LIG3P49916 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
LIG3P49916 RAD54B-201ENST00000297592 1879 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 C2CD5-202ENST00000396028 3463 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 C2CD5-203ENST00000446597 3490 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 C2CD5-206ENST00000536386 3496 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 DMD-222ENST00000474231 5209 ntTSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 FAM3C2-201ENST00000312214 681 ntBASIC7.19□□□□□ -1.26
LIG3P49916 RNA5SP333-201ENST00000363466 118 ntBASIC7.19□□□□□ -1.26
LIG3P49916 RNA5SP472-201ENST00000363868 119 ntBASIC7.19□□□□□ -1.26
LIG3P49916 RNA5SP334-201ENST00000364825 118 ntBASIC7.19□□□□□ -1.26
LIG3P49916 SNORA70.5-201ENST00000365519 135 ntBASIC7.19□□□□□ -1.26
LIG3P49916 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 RNU6-1055P-201ENST00000391085 107 ntBASIC7.19□□□□□ -1.26
LIG3P49916 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
LIG3P49916 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 MEAF6P1-201ENST00000416092 327 ntBASIC7.19□□□□□ -1.26
LIG3P49916 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC7.19□□□□□ -1.26
LIG3P49916 AC004074.1-201ENST00000421810 1063 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC7.19□□□□□ -1.26
LIG3P49916 SCP2-206ENST00000430330 938 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 AC104698.1-201ENST00000435671 276 ntBASIC7.19□□□□□ -1.26
LIG3P49916 OSTCP2-201ENST00000437956 444 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AL592114.2-201ENST00000440142 532 ntBASIC7.19□□□□□ -1.26
LIG3P49916 YWHAZP2-201ENST00000440317 728 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 RPS7P4-201ENST00000444127 582 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC010240.2-201ENST00000445363 1205 ntBASIC7.19□□□□□ -1.26
LIG3P49916 TAF9P1-201ENST00000445421 515 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC019186.1-201ENST00000447019 545 ntTSL 3 BASIC7.19□□□□□ -1.26
LIG3P49916 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC7.19□□□□□ -1.26
LIG3P49916 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 TAF9P2-201ENST00000454958 515 ntBASIC7.19□□□□□ -1.26
LIG3P49916 RPLP0P1-201ENST00000457002 361 ntBASIC7.19□□□□□ -1.26
LIG3P49916 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 RPL21P42-201ENST00000488408 464 ntBASIC7.19□□□□□ -1.26
LIG3P49916 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 RNA5SP518-201ENST00000515957 119 ntBASIC7.19□□□□□ -1.26
LIG3P49916 MTND1P5-201ENST00000517906 940 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC7.19□□□□□ -1.26
LIG3P49916 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC7.19□□□□□ -1.26
LIG3P49916 AC107952.1-201ENST00000524200 376 ntBASIC7.19□□□□□ -1.26
LIG3P49916 GLYATL1P4-201ENST00000529326 906 ntBASIC7.19□□□□□ -1.26
LIG3P49916 ZDHHC20P3-201ENST00000531576 336 ntBASIC7.19□□□□□ -1.26
LIG3P49916 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 AL049844.1-201ENST00000545614 762 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 AGGF1P7-201ENST00000562369 913 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC7.19□□□□□ -1.26
LIG3P49916 RBM22P12-201ENST00000567098 1255 ntBASIC7.19□□□□□ -1.26
LIG3P49916 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC7.19□□□□□ -1.26
LIG3P49916 RN7SL131P-201ENST00000579043 256 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC011468.2-202ENST00000594362 579 ntTSL 5 BASIC7.19□□□□□ -1.26
LIG3P49916 AL049840.5-201ENST00000602827 552 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AL078624.2-201ENST00000605063 554 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC122710.3-201ENST00000606566 541 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AP000254.1-201ENST00000609934 520 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC009283.1-201ENST00000615852 645 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC022306.2-201ENST00000617563 647 ntBASIC7.19□□□□□ -1.26
LIG3P49916 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
LIG3P49916 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC7.19□□□□□ -1.26
LIG3P49916 AC024023.1-201ENST00000624530 922 ntBASIC7.19□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms