Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
HNF4AP41235 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
HNF4AP41235 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HNF4AP41235 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HNF4AP41235 AC005224.3-201ENST00000584683 2140 ntBASIC5.77□□□□□ -1.49
HNF4AP41235 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HNF4AP41235 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HNF4AP41235 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.76□□□□□ -1.49
HNF4AP41235 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 RN7SKP187-201ENST00000365536 330 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 TRIM60P17-201ENST00000415181 719 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AL354868.1-201ENST00000417077 482 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.76□□□□□ -1.49
HNF4AP41235 RPL24P2-201ENST00000421023 475 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.76□□□□□ -1.49
HNF4AP41235 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.76□□□□□ -1.49
HNF4AP41235 MTND4LP13-201ENST00000425022 298 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 AC092651.1-201ENST00000426110 312 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 RPL5P2-201ENST00000429598 854 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 PNKDP1-201ENST00000435914 430 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.76□□□□□ -1.49
HNF4AP41235 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 AC108751.3-201ENST00000461814 1020 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.76□□□□□ -1.49
HNF4AP41235 RN7SL170P-201ENST00000487098 295 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AK4P6-201ENST00000505168 528 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.76□□□□□ -1.49
HNF4AP41235 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.76□□□□□ -1.49
HNF4AP41235 PRMT5P1-201ENST00000514351 598 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC097486.1-201ENST00000515331 210 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC020937.1-201ENST00000519677 1013 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC5.76□□□□□ -1.49
HNF4AP41235 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.76□□□□□ -1.49
HNF4AP41235 AC024405.1-201ENST00000532521 1042 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC006512.2-201ENST00000543250 486 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 NPM1P42-201ENST00000560329 862 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.76□□□□□ -1.49
HNF4AP41235 AC092332.1-201ENST00000563684 829 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC5.76□□□□□ -1.49
HNF4AP41235 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 AC068768.2-201ENST00000602352 343 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC5.76□□□□□ -1.49
HNF4AP41235 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 AC073593.1-201ENST00000624500 411 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 AC000095.2-202ENST00000637415 154 ntBASIC5.76□□□□□ -1.49
HNF4AP41235 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.76□□□□□ -1.49
HNF4AP41235 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.76□□□□□ -1.49
HNF4AP41235 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.76□□□□□ -1.49
HNF4AP41235 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HNF4AP41235 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HNF4AP41235 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC5.75□□□□□ -1.49
HNF4AP41235 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
HNF4AP41235 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
HNF4AP41235 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HNF4AP41235 RBPJP7-201ENST00000442803 1447 ntBASIC5.75□□□□□ -1.49
HNF4AP41235 RBPJP5-201ENST00000449433 1447 ntBASIC5.75□□□□□ -1.49
HNF4AP41235 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.75□□□□□ -1.49
HNF4AP41235 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.75□□□□□ -1.49
HNF4AP41235 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.75□□□□□ -1.49
HNF4AP41235 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.75□□□□□ -1.49
HNF4AP41235 LYARP1-201ENST00000436977 1501 ntBASIC5.75□□□□□ -1.49
HNF4AP41235 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
HNF4AP41235 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.75□□□□□ -1.49
HNF4AP41235 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
HNF4AP41235 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HNF4AP41235 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.75□□□□□ -1.49
HNF4AP41235 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.75□□□□□ -1.49
HNF4AP41235 COX6B1P3-201ENST00000312310 260 ntBASIC5.75□□□□□ -1.49
HNF4AP41235 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.75□□□□□ -1.49
HNF4AP41235 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC5.75□□□□□ -1.49
HNF4AP41235 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HNF4AP41235 OR51A6P-201ENST00000418680 1004 ntBASIC5.75□□□□□ -1.49
HNF4AP41235 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.75□□□□□ -1.49
HNF4AP41235 AC115283.1-201ENST00000427353 400 ntBASIC5.75□□□□□ -1.49
HNF4AP41235 YY1P1-201ENST00000427625 668 ntBASIC5.75□□□□□ -1.49
HNF4AP41235 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
HNF4AP41235 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms