Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 POT1-202ENST00000393329 3950 ntTSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 RNA5SP326-201ENST00000363209 110 ntBASIC6.69□□□□□ -1.34
BRCA1P38398 RNU6-398P-201ENST00000384143 109 ntBASIC6.69□□□□□ -1.34
BRCA1P38398 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.69□□□□□ -1.34
BRCA1P38398 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC6.69□□□□□ -1.34
BRCA1P38398 RPS23P7-201ENST00000466210 444 ntBASIC6.69□□□□□ -1.34
BRCA1P38398 MIR2117-201ENST00000516780 80 ntBASIC6.69□□□□□ -1.34
BRCA1P38398 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
BRCA1P38398 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.69□□□□□ -1.34
BRCA1P38398 DCP1A-206ENST00000610213 5994 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
BRCA1P38398 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
BRCA1P38398 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
BRCA1P38398 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
BRCA1P38398 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
BRCA1P38398 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
BRCA1P38398 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
BRCA1P38398 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC6.69□□□□□ -1.34
BRCA1P38398 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
BRCA1P38398 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
BRCA1P38398 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.68□□□□□ -1.34
BRCA1P38398 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 GAPDHP15-201ENST00000398586 975 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 RPS16P5-201ENST00000406501 404 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 AL731534.1-201ENST00000434711 269 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 RPL34P20-201ENST00000442771 351 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 AC009963.2-201ENST00000453431 138 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 NDUFA12P1-201ENST00000455914 406 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC6.68□□□□□ -1.34
BRCA1P38398 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
BRCA1P38398 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.68□□□□□ -1.34
BRCA1P38398 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.68□□□□□ -1.34
BRCA1P38398 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC6.68□□□□□ -1.34
BRCA1P38398 AC011497.2-201ENST00000600255 639 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 AL450226.2-201ENST00000622913 439 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 AC015660.5-201ENST00000623238 564 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
BRCA1P38398 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.68□□□□□ -1.34
BRCA1P38398 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 DSC3-202ENST00000434452 6978 ntTSL 5 BASIC6.68□□□□□ -1.34
BRCA1P38398 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC6.68□□□□□ -1.34
BRCA1P38398 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.68□□□□□ -1.34
BRCA1P38398 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
BRCA1P38398 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC6.68□□□□□ -1.34
BRCA1P38398 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC6.68□□□□□ -1.34
BRCA1P38398 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 NHLRC2-201ENST00000369301 11051 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
BRCA1P38398 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 CHMP1B2P-201ENST00000399581 597 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC6.68□□□□□ -1.34
BRCA1P38398 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC6.68□□□□□ -1.34
BRCA1P38398 AL451063.1-201ENST00000450164 1133 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC6.68□□□□□ -1.34
BRCA1P38398 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC6.68□□□□□ -1.34
BRCA1P38398 AP005403.1-201ENST00000579720 229 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.68□□□□□ -1.34
BRCA1P38398 AL162431.4-201ENST00000604674 411 ntBASIC6.68□□□□□ -1.34
BRCA1P38398 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC6.68□□□□□ -1.34
BRCA1P38398 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
BRCA1P38398 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 KAT7-201ENST00000259021 9644 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.67□□□□□ -1.34
BRCA1P38398 PAX6-270ENST00000640368 6975 ntAPPRIS P4 TSL 5 BASIC6.67□□□□□ -1.34
BRCA1P38398 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.67□□□□□ -1.34
BRCA1P38398 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.67□□□□□ -1.34
BRCA1P38398 FAM3C2-201ENST00000312214 681 ntBASIC6.67□□□□□ -1.34
BRCA1P38398 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 RNA5SP455-201ENST00000365190 119 ntBASIC6.67□□□□□ -1.34
BRCA1P38398 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.67□□□□□ -1.34
BRCA1P38398 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.67□□□□□ -1.34
BRCA1P38398 AC093655.2-201ENST00000425735 631 ntBASIC6.67□□□□□ -1.34
BRCA1P38398 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC6.67□□□□□ -1.34
BRCA1P38398 AC020937.1-201ENST00000519677 1013 ntBASIC6.67□□□□□ -1.34
BRCA1P38398 AC005000.1-201ENST00000536192 288 ntBASIC6.67□□□□□ -1.34
BRCA1P38398 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.67□□□□□ -1.34
BRCA1P38398 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.67□□□□□ -1.34
BRCA1P38398 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC6.67□□□□□ -1.34
BRCA1P38398 AC108449.2-201ENST00000560865 552 ntTSL 3 BASIC6.67□□□□□ -1.34
BRCA1P38398 AC090607.5-201ENST00000615692 224 ntBASIC6.67□□□□□ -1.34
BRCA1P38398 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC6.67□□□□□ -1.34
BRCA1P38398 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
BRCA1P38398 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 865.3 ms