Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC119403.2-201ENST00000590960 598 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 RPL12P48-201ENST00000605620 304 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 uc_338.31-201ENST00000615595 186 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
NKX3-1Q99801 UGT2B24P-201ENST00000514441 1597 ntBASIC5.12□□□□□ -1.59
NKX3-1Q99801 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NKX3-1Q99801 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
NKX3-1Q99801 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC025470.1-201ENST00000510053 2032 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
NKX3-1Q99801 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
NKX3-1Q99801 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
NKX3-1Q99801 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
NKX3-1Q99801 RNU6-1331P-201ENST00000363658 106 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 GCNT1P4-201ENST00000404096 329 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 RN7SKP17-201ENST00000411242 351 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 RN7SKP108-201ENST00000411367 328 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 GABARAPL3-201ENST00000412799 354 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AL590004.3-202ENST00000445883 451 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC004129.2-201ENST00000457229 287 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 RN7SL254P-201ENST00000460609 284 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC093719.1-201ENST00000480427 441 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 RPL12P30-201ENST00000488389 499 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 GOLGA5P1-201ENST00000507317 980 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 HMGN1P17-201ENST00000513734 295 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC126615.2-201ENST00000553003 515 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 AL731537.2-201ENST00000561565 951 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC002310.3-201ENST00000569728 723 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AP001823.1-201ENST00000604056 1003 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC111152.1-202ENST00000635848 339 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
NKX3-1Q99801 AL022311.1-201ENST00000623726 19416 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.11□□□□□ -1.59
NKX3-1Q99801 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
NKX3-1Q99801 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC5.11□□□□□ -1.59
NKX3-1Q99801 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 OR7E156P-201ENST00000400303 464 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC096644.3-201ENST00000416788 338 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 AL354868.1-201ENST00000417077 482 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 RPS7P8-201ENST00000418311 581 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC092865.3-201ENST00000425390 1026 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 MTATP6P11-201ENST00000428071 670 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC023141.3-201ENST00000436698 278 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.1□□□□□ -1.59
NKX3-1Q99801 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
NKX3-1Q99801 AL663074.2-201ENST00000440621 479 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 CDY11P-201ENST00000447168 1651 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 FRG2FP-204ENST00000453982 852 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 RPL31P53-201ENST00000457065 348 ntBASIC5.1□□□□□ -1.59
NKX3-1Q99801 AC104164.1-201ENST00000460282 590 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms