Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 CCPG1-212ENST00000569205 2970 ntTSL 2 BASIC8.09□□□□□ -1.11
HLA-CQ95604 FCRL4-201ENST00000271532 3459 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
HLA-CQ95604 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
HLA-CQ95604 GTF2IP1-202ENST00000614592 2047 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 AC092279.2-201ENST00000623742 2189 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 LMLN-202ENST00000332636 1812 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC8.08□□□□□ -1.12
HLA-CQ95604 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 PABPC4L-201ENST00000421491 4944 ntAPPRIS P1 TSL 3 BASIC8.08□□□□□ -1.12
HLA-CQ95604 INTS7-202ENST00000366993 3422 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 GLYATL2-201ENST00000287275 1640 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 MSS51-201ENST00000299432 2421 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 ISX-201ENST00000308700 3384 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 NEDD4L-203ENST00000357895 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 FAM122C-211ENST00000623326 2064 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 OR1G1-201ENST00000328890 998 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HLA-CQ95604 RNY3P3-201ENST00000363816 102 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC8.08□□□□□ -1.12
HLA-CQ95604 Y_RNA.409-201ENST00000383990 98 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HLA-CQ95604 RPL5P5-201ENST00000392009 893 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
HLA-CQ95604 RPS3AP36-201ENST00000398190 775 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 IL6-206ENST00000407492 926 ntTSL 3 BASIC8.08□□□□□ -1.12
HLA-CQ95604 RNU6-908P-201ENST00000410160 94 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 RN7SKP146-201ENST00000410242 334 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC211486.3-201ENST00000412694 621 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC8.08□□□□□ -1.12
HLA-CQ95604 TMBIM7P-201ENST00000418074 855 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 AC083875.1-201ENST00000419509 405 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 EIF1P3-201ENST00000423841 334 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 AL121908.1-201ENST00000443055 668 ntTSL 4 BASIC8.08□□□□□ -1.12
HLA-CQ95604 RPL23AP20-201ENST00000447965 421 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 CEACAMP5-201ENST00000448037 961 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 ST13P14-201ENST00000474095 734 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC114981.1-201ENST00000503897 678 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 RPL7L1P13-201ENST00000511702 739 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 NPM1P21-201ENST00000513394 762 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 RNA5SP135-201ENST00000517019 125 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 LINC01603-202ENST00000519557 712 ntTSL 3 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC107952.1-201ENST00000524200 376 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 BRD9P1-201ENST00000529855 560 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC8.08□□□□□ -1.12
HLA-CQ95604 NACA-211ENST00000548563 827 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC093012.1-202ENST00000549403 582 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC026464.1-202ENST00000564737 722 ntAPPRIS P5 TSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC115286.1-201ENST00000604298 434 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 AL136363.1-201ENST00000605349 337 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 AC018695.5-201ENST00000605872 315 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC090527.3-201ENST00000619041 548 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 CLEC19A-205ENST00000636231 561 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 SOCS5P5-201ENST00000402732 1586 ntBASIC8.08□□□□□ -1.12
HLA-CQ95604 IL1R1-208ENST00000424272 2658 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 FAM217B-202ENST00000360816 5036 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 RASSF5-209ENST00000636182 3427 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 KIAA1217-208ENST00000396446 3059 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 ERGIC1-201ENST00000326654 3952 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
HLA-CQ95604 USP3-201ENST00000268049 5311 ntTSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC8.08□□□□□ -1.12
HLA-CQ95604 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
HLA-CQ95604 TDP1-201ENST00000335725 3702 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
HLA-CQ95604 CTNND2-205ENST00000503622 2982 ntTSL 2 BASIC8.07□□□□□ -1.12
HLA-CQ95604 KCNJ15-207ENST00000398934 2815 ntAPPRIS P1 TSL 3 BASIC8.07□□□□□ -1.12
HLA-CQ95604 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
HLA-CQ95604 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
HLA-CQ95604 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC8.07□□□□□ -1.12
HLA-CQ95604 AC139256.1-201ENST00000569858 2598 ntTSL 2 BASIC8.07□□□□□ -1.12
HLA-CQ95604 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC8.07□□□□□ -1.12
HLA-CQ95604 AL031651.1-201ENST00000615357 1438 ntBASIC8.07□□□□□ -1.12
HLA-CQ95604 OGDH-210ENST00000631326 4116 ntTSL 5 BASIC8.07□□□□□ -1.12
HLA-CQ95604 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
HLA-CQ95604 RNU6-216P-201ENST00000363282 104 ntBASIC8.07□□□□□ -1.12
HLA-CQ95604 Y_RNA.157-201ENST00000363638 102 ntBASIC8.07□□□□□ -1.12
HLA-CQ95604 SUGT1P1-201ENST00000379514 476 ntBASIC8.07□□□□□ -1.12
HLA-CQ95604 Y_RNA.419-201ENST00000384041 102 ntBASIC8.07□□□□□ -1.12
HLA-CQ95604 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
HLA-CQ95604 OR4K12P-201ENST00000406538 961 ntBASIC8.07□□□□□ -1.12
HLA-CQ95604 RPL12P9-201ENST00000412942 488 ntBASIC8.07□□□□□ -1.12
HLA-CQ95604 OR51A3P-201ENST00000413596 924 ntBASIC8.07□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms