Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC8.36□□□□□ -1.07
COL9A1P20849 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC8.36□□□□□ -1.07
COL9A1P20849 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC8.36□□□□□ -1.07
COL9A1P20849 RPS24P13-201ENST00000442520 397 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
COL9A1P20849 AC068587.1-201ENST00000483613 781 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 RPS3AP50-201ENST00000487064 803 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AC098583.2-201ENST00000504151 372 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 HSPD1P18-201ENST00000504252 244 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AC010587.1-201ENST00000505809 469 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 GAPDHP56-201ENST00000506031 988 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC8.36□□□□□ -1.07
COL9A1P20849 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 SNORA40.12-201ENST00000516329 111 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC8.36□□□□□ -1.07
COL9A1P20849 COX6C-210ENST00000524245 513 ntAPPRIS P1 TSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 OR8A2P-201ENST00000528631 952 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC8.36□□□□□ -1.07
COL9A1P20849 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC8.36□□□□□ -1.07
COL9A1P20849 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 CYCSP2-201ENST00000558168 301 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 AC022165.1-201ENST00000568771 596 ntTSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 AC139085.1-201ENST00000582716 182 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 AC087763.1-201ENST00000603391 286 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AP000654.2-201ENST00000605633 586 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AL022345.1-201ENST00000607292 135 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC8.36□□□□□ -1.07
COL9A1P20849 FAM27E3-202ENST00000614611 340 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 uc_338.22-201ENST00000622722 187 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 ARID5B-202ENST00000309334 3141 ntTSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 SIAH1-201ENST00000356721 2415 ntAPPRIS ALT1 TSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 SLC30A8-201ENST00000427715 5430 ntTSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 MAGEB16-202ENST00000399987 1736 ntAPPRIS P2 TSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 PMS2CL-204ENST00000486256 3327 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 DMD-209ENST00000378702 2617 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 AC217777.1-201ENST00000570034 1471 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 AC022150.4-201ENST00000598322 2848 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 SPATA31D1-201ENST00000344803 4833 ntAPPRIS P1 TSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 LINC01940-201ENST00000455228 3489 ntTSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 MAPK10-240ENST00000639175 2596 ntAPPRIS P2 TSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 NOTCH2NL-203ENST00000578207 5042 ntAPPRIS P2 TSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 ASNSP1-204ENST00000641977 1664 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 DPP9-203ENST00000594671 3851 ntTSL 5 BASIC8.36□□□□□ -1.07
COL9A1P20849 AL353753.1-201ENST00000612217 2320 ntTSL 2 BASIC8.36□□□□□ -1.07
COL9A1P20849 NEK6-204ENST00000373603 3447 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 AC092645.1-201ENST00000624058 2272 ntBASIC8.36□□□□□ -1.07
COL9A1P20849 TCF20-202ENST00000359486 7410 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
COL9A1P20849 AL512590.3-202ENST00000534123 6463 ntTSL 2 BASIC8.35□□□□□ -1.07
COL9A1P20849 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 CPEB4-209ENST00000522336 1551 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 NOX4-210ENST00000527956 2379 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 KIAA1328-207ENST00000591619 5881 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 PTPRM-203ENST00000400060 5030 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 ATP6V1C1-201ENST00000395862 5612 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 JAKMIP2-206ENST00000616793 9272 ntAPPRIS ALT1 TSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 THBS4-204ENST00000511733 3094 ntAPPRIS ALT2 TSL 2 BASIC8.35□□□□□ -1.07
COL9A1P20849 LRRC4C-204ENST00000530763 2669 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 CES5A-203ENST00000518005 2092 ntTSL 2 BASIC8.35□□□□□ -1.07
COL9A1P20849 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 RNA5SP378-201ENST00000363646 120 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 RNU6-619P-201ENST00000365146 108 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 RNU6-209P-201ENST00000384118 107 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 RNU6-985P-201ENST00000410182 104 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 RNU6-1148P-201ENST00000410992 104 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC8.35□□□□□ -1.07
COL9A1P20849 AL049758.1-201ENST00000423154 397 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC8.35□□□□□ -1.07
COL9A1P20849 AL589872.1-201ENST00000426602 288 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 SRIP2-201ENST00000428470 166 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
COL9A1P20849 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC8.35□□□□□ -1.07
COL9A1P20849 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC8.35□□□□□ -1.07
COL9A1P20849 TDRG1-202ENST00000448433 1015 ntTSL 3 BASIC8.35□□□□□ -1.07
COL9A1P20849 PPP1R2P5-201ENST00000457256 603 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 RN7SL791P-201ENST00000467868 295 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 CBX5P1-201ENST00000468470 561 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 AC135999.1-201ENST00000478962 479 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 AC090638.1-201ENST00000498296 909 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 CDH12P2-201ENST00000504393 298 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 AC104063.1-201ENST00000504840 702 ntTSL 3 BASIC8.35□□□□□ -1.07
COL9A1P20849 PCBP2P3-201ENST00000509726 843 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 RNU6-1137P-201ENST00000517073 99 ntBASIC8.35□□□□□ -1.07
COL9A1P20849 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC8.35□□□□□ -1.07
COL9A1P20849 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC8.35□□□□□ -1.07
COL9A1P20849 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC8.35□□□□□ -1.07
COL9A1P20849 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC8.35□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms