Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 RARRES2P10-201ENST00000564312 460 ntBASIC21.1■□□□□ 0.97
SIX4Q9UIU6 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SIX4Q9UIU6 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 AC125437.2-201ENST00000625180 2167 ntBASIC21.09■□□□□ 0.97
SIX4Q9UIU6 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 REXO2-216ENST00000544196 452 ntTSL 3 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SIX4Q9UIU6 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 HTR7P1-201ENST00000538670 1336 ntBASIC21.08■□□□□ 0.97
SIX4Q9UIU6 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.08■□□□□ 0.97
SIX4Q9UIU6 AP006294.2-201ENST00000641667 209 ntBASIC21.08■□□□□ 0.97
SIX4Q9UIU6 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
SIX4Q9UIU6 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SIX4Q9UIU6 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SIX4Q9UIU6 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SIX4Q9UIU6 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.08■□□□□ 0.96
SIX4Q9UIU6 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SIX4Q9UIU6 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 RPS2P55-201ENST00000397318 883 ntBASIC21.07■□□□□ 0.96
SIX4Q9UIU6 TUBB8P6-201ENST00000436895 1288 ntBASIC21.07■□□□□ 0.96
SIX4Q9UIU6 AC107956.1-201ENST00000494359 873 ntBASIC21.07■□□□□ 0.96
SIX4Q9UIU6 C1QL1P1-201ENST00000568105 661 ntBASIC21.07■□□□□ 0.96
SIX4Q9UIU6 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 AC233702.5-201ENST00000584107 538 ntBASIC21.07■□□□□ 0.96
SIX4Q9UIU6 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SIX4Q9UIU6 PKD1P6-201ENST00000343738 4769 ntBASIC21.06■□□□□ 0.96
SIX4Q9UIU6 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 AC012618.2-201ENST00000428058 849 ntBASIC21.06■□□□□ 0.96
SIX4Q9UIU6 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.06■□□□□ 0.96
SIX4Q9UIU6 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms