Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 AC097658.1-201ENST00000475555 843 ntBASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 AC092666.2-201ENST00000613287 246 ntBASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VPS29Q9UBQ0 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 AIRN-201ENST00000601203 4374 ntBASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS29Q9UBQ0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS29Q9UBQ0 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS29Q9UBQ0 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
VPS29Q9UBQ0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.83■□□□□ 0.61
VPS29Q9UBQ0 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 MYC-209ENST00000641252 345 ntBASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 TFP1-202ENST00000475455 1573 ntBASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS29Q9UBQ0 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 AC006557.6-201ENST00000623071 864 ntBASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 HLA-B-256ENST00000639848 1089 ntBASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VPS29Q9UBQ0 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms