Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC099778.1-201ENST00000568593 1911 ntBASIC19.76■□□□□ 0.75
DKK3Q9UBP4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 MIR4497-201ENST00000583208 89 ntBASIC19.76■□□□□ 0.75
DKK3Q9UBP4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 AL691432.2-201ENST00000607222 2038 ntBASIC19.76■□□□□ 0.75
DKK3Q9UBP4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.76■□□□□ 0.75
DKK3Q9UBP4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.75■□□□□ 0.75
DKK3Q9UBP4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 TUBB8P6-201ENST00000436895 1288 ntBASIC19.75■□□□□ 0.75
DKK3Q9UBP4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 AC113410.3-201ENST00000623366 203 ntBASIC19.75■□□□□ 0.75
DKK3Q9UBP4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.75■□□□□ 0.75
DKK3Q9UBP4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 C1QL1P1-201ENST00000568105 661 ntBASIC19.74■□□□□ 0.75
DKK3Q9UBP4 AC073195.1-201ENST00000607241 877 ntBASIC19.74■□□□□ 0.75
DKK3Q9UBP4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
DKK3Q9UBP4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 LINC01521-201ENST00000504184 1943 ntBASIC19.73■□□□□ 0.75
DKK3Q9UBP4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.73■□□□□ 0.75
DKK3Q9UBP4 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
DKK3Q9UBP4 TMEM179-206ENST00000616017 1645 ntBASIC19.73■□□□□ 0.75
DKK3Q9UBP4 AL157384.1-201ENST00000445995 2473 ntBASIC19.73■□□□□ 0.75
DKK3Q9UBP4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
DKK3Q9UBP4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms