Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.08■□□□□ 0.81
SHROOM3Q8TF72 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 MTDHP1-201ENST00000605323 784 ntBASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
SHROOM3Q8TF72 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 ESRRAP1-201ENST00000400596 1257 ntBASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHROOM3Q8TF72 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHROOM3Q8TF72 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHROOM3Q8TF72 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHROOM3Q8TF72 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms