Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 AC106795.1-205ENST00000512851 1056 ntBASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.4■■□□□ 1.34
SMC1BQ8NDV3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.34
SMC1BQ8NDV3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.34
SMC1BQ8NDV3 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
SMC1BQ8NDV3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC23.39■■□□□ 1.34
SMC1BQ8NDV3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.39■■□□□ 1.34
SMC1BQ8NDV3 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
SMC1BQ8NDV3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.34
SMC1BQ8NDV3 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 AC092183.1-201ENST00000469884 875 ntBASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 CA15P1-201ENST00000481698 905 ntBASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
SMC1BQ8NDV3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 AL645929.1-201ENST00000420084 975 ntBASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 SPDYE13P-201ENST00000445314 798 ntBASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 MIR3180-1-201ENST00000580374 94 ntBASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 MIR3180-3-201ENST00000584616 94 ntBASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
SMC1BQ8NDV3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 AC079781.3-201ENST00000449110 356 ntBASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 AL662844.1-201ENST00000546340 181 ntBASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 SLC25A6P4-201ENST00000586535 553 ntBASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 PTBP1P-201ENST00000554374 1601 ntBASIC23.37■■□□□ 1.33
SMC1BQ8NDV3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC23.36■■□□□ 1.33
SMC1BQ8NDV3 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC23.36■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms