Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP54Q70EL1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC26.38■■□□□ 1.81
USP54Q70EL1 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC26.38■■□□□ 1.81
USP54Q70EL1 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC26.38■■□□□ 1.81
USP54Q70EL1 SLC25A1P4-201ENST00000567977 778 ntBASIC26.38■■□□□ 1.81
USP54Q70EL1 CD37-204ENST00000535669 1674 ntTSL 2 BASIC26.38■■□□□ 1.81
USP54Q70EL1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP54Q70EL1 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP54Q70EL1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC26.37■■□□□ 1.81
USP54Q70EL1 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
USP54Q70EL1 KRT8P41-201ENST00000533985 1514 ntBASIC26.37■■□□□ 1.81
USP54Q70EL1 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP54Q70EL1 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
USP54Q70EL1 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
USP54Q70EL1 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
USP54Q70EL1 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC26.37■■□□□ 1.81
USP54Q70EL1 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC26.37■■□□□ 1.81
USP54Q70EL1 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
USP54Q70EL1 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP54Q70EL1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP54Q70EL1 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC26.36■■□□□ 1.81
USP54Q70EL1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP54Q70EL1 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
USP54Q70EL1 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
USP54Q70EL1 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
USP54Q70EL1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP54Q70EL1 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC26.36■■□□□ 1.81
USP54Q70EL1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP54Q70EL1 CA15P1-201ENST00000481698 905 ntBASIC26.36■■□□□ 1.81
USP54Q70EL1 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
USP54Q70EL1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC26.36■■□□□ 1.81
USP54Q70EL1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
USP54Q70EL1 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC26.36■■□□□ 1.81
USP54Q70EL1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP54Q70EL1 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
USP54Q70EL1 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC26.36■■□□□ 1.81
USP54Q70EL1 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP54Q70EL1 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
USP54Q70EL1 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP54Q70EL1 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP54Q70EL1 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP54Q70EL1 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
USP54Q70EL1 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC26.35■■□□□ 1.81
USP54Q70EL1 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP54Q70EL1 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC26.35■■□□□ 1.81
USP54Q70EL1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
USP54Q70EL1 SLC25A1P2-201ENST00000430693 912 ntBASIC26.34■■□□□ 1.81
USP54Q70EL1 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC26.34■■□□□ 1.81
USP54Q70EL1 YBX1P2-201ENST00000489612 999 ntBASIC26.34■■□□□ 1.81
USP54Q70EL1 CYGB-204ENST00000589342 815 ntTSL 3 BASIC26.34■■□□□ 1.81
USP54Q70EL1 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
USP54Q70EL1 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP54Q70EL1 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
USP54Q70EL1 AK4P3-201ENST00000418260 669 ntBASIC26.34■■□□□ 1.81
USP54Q70EL1 CCR12P-201ENST00000446203 998 ntBASIC26.34■■□□□ 1.81
USP54Q70EL1 AL023803.3-201ENST00000615559 522 ntBASIC26.34■■□□□ 1.81
USP54Q70EL1 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
USP54Q70EL1 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
USP54Q70EL1 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC26.33■■□□□ 1.81
USP54Q70EL1 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC26.33■■□□□ 1.81
USP54Q70EL1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC26.33■■□□□ 1.81
USP54Q70EL1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC26.33■■□□□ 1.81
USP54Q70EL1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC26.33■■□□□ 1.81
USP54Q70EL1 AC092338.2-201ENST00000568827 1415 ntBASIC26.33■■□□□ 1.81
USP54Q70EL1 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 GUK1-204ENST00000366721 689 ntTSL 3 BASIC26.33■■□□□ 1.81
USP54Q70EL1 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 LIN28AP1-201ENST00000429574 405 ntBASIC26.33■■□□□ 1.81
USP54Q70EL1 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
USP54Q70EL1 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC26.33■■□□□ 1.81
USP54Q70EL1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
USP54Q70EL1 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
USP54Q70EL1 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
USP54Q70EL1 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC26.33■■□□□ 1.8
USP54Q70EL1 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP54Q70EL1 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC26.32■■□□□ 1.8
USP54Q70EL1 ANKRD20A18P-201ENST00000359341 492 ntBASIC26.32■■□□□ 1.8
USP54Q70EL1 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC26.32■■□□□ 1.8
USP54Q70EL1 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC26.32■■□□□ 1.8
USP54Q70EL1 AC008622.2-201ENST00000617006 1229 ntBASIC26.32■■□□□ 1.8
USP54Q70EL1 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
USP54Q70EL1 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP54Q70EL1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP54Q70EL1 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
USP54Q70EL1 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP54Q70EL1 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
USP54Q70EL1 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
USP54Q70EL1 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC26.31■■□□□ 1.8
USP54Q70EL1 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC26.31■■□□□ 1.8
USP54Q70EL1 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
USP54Q70EL1 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP54Q70EL1 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
USP54Q70EL1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms